Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18a22
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    56   2e-08
AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/56 (44%), Positives = 39/56 (69%)
 Frame = -1

Query: 173 ILKVVKEHAIPLSKHKTGYRLLIAIFDSVDDTVLVKKTIVSTLAANIKDIAKDHWG 6
           I+K  K+ ++  +    G+R+L+A+FD+VDDTVL+ K IVS LA  +K + +D WG
Sbjct: 494 IVKNFKDLSVKAAMEHYGHRVLLALFDTVDDTVLLNKVIVSELANEMKKLIEDDWG 549


>AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical
           protein K10G6.2 protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 400 FYCFPGKRHPFY-NCYKYANVCKT 468
           + C+PG R P Y NC ++A  C+T
Sbjct: 152 YECYPGTRAPAYNNCQRWAAKCRT 175


>Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical
           protein M28.7 protein.
          Length = 682

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 194 RTIFFQTILKVVKEHAIPLSKHKTGYRLLIAIFDSVDDTVLVKKTIVSTLAANIK 30
           RT+    I+++V+   +PL +HK   R+ +    +   T +V    V TL   +K
Sbjct: 361 RTVHISKIIRLVRFEKMPLIEHKALVRMALVDITNPKSTQIVSN--VHTLVPRVK 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,495,472
Number of Sequences: 27780
Number of extensions: 242206
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)