Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18a15
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    29   0.60 
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    29   0.60 
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    29   0.60 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   5.6  

>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 182 FTLFCTWNVNDIEVVFSQIFL*LFLRASLYSVRIVLIG 69
           FTL   WN     VVFS+  L  F++ S Y   IV++G
Sbjct: 414 FTLVLMWNWIGDMVVFSKNVLFRFIQLSFYVGMIVILG 451


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 315 PFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELCPSPTDQAAVLSLVTKLQTVLDNIVV 494
           P  +L   P  P+    PD + L Q +L+    LC        V  L  + +T+L ++ V
Sbjct: 213 PLTVLTQNPNLPKLLERPDINDLHQGILQELDSLCNCLGSSLDVKKLSKQRETLLSHMQV 272

Query: 495 AP 500
            P
Sbjct: 273 NP 274


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 547 PTCRTSSSCWQAANSPGATTILSNTVCSFVTRL-KTAA*SVG 425
           P+  T+++     ++ G TT  SN+  SF+TRL  TAA S G
Sbjct: 763 PSTPTATTISTTTSASGITTTASNSRDSFITRLPPTAALSTG 804


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +2

Query: 266 DGASTLQQTPSLDASSALRPFISRTRFS*MQTGSRRLRAHSGPSKEAHGAMSVTYRSSSC 445
           DGAST  + PS DA + + P+      +   +GS         + E+H    +  +S  C
Sbjct: 7   DGASTSVK-PSDDAVNTVTPWSILLTNNKPMSGSENTL-----NNESHEMSQILKKSGLC 60

Query: 446 FEPR---HETADSIGQYCCGSRRI 508
           ++PR   H T   +  +    RR+
Sbjct: 61  YDPRMRFHATLSEVDDHPEDPRRV 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,307
Number of Sequences: 5004
Number of extensions: 40179
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)