Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18a15
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 30 1.1
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 29 1.9
06_03_1478 - 30420097-30420651 29 3.3
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 29 3.3
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 28 4.3
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674... 28 5.7
09_02_0517 + 10139859-10140245 27 10.0
05_04_0375 + 20750170-20751011,20751707-20751865,20752894-207531... 27 10.0
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 27 10.0
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 27 10.0
03_04_0124 - 17480282-17480647 27 10.0
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 GASTLQQTPSL-DASSALRPFISRTRFS*MQTGSRRLRAHSGPSKEAHGAMSVTYRSSSC 445
G LQ+TPS D+ S + R S G + L + GP ++G S
Sbjct: 322 GFLPLQKTPSTGDSLSPFSLIVKRASQSLSSRGLKSLCSQQGPGSCSYG---------SA 372
Query: 446 FEPRHETADSIGQYCCGSRRICSLPATR 529
+P + +S C G R CS P T+
Sbjct: 373 ADPTAISGESWSSKCSGLTRTCSRPLTK 400
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 312 PPFDLLLAEPAFPRCKPAPDDSVLTQALLKRHTELC-PSPTDQAAVL 449
PP +L + +FP PA D +L L +RH C P P V+
Sbjct: 17 PPPPFILRQLSFPAAVPALDLDILCCRLSRRHRLACLPQPPSDVLVV 63
>06_03_1478 - 30420097-30420651
Length = 184
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 258 GRGYRVHHDRCRAPFQEKQFILG*R 184
G+ YR DRC+APF+ +Q + G R
Sbjct: 103 GKRYRYVCDRCKAPFETRQALGGHR 127
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 248 YPRPGRDGASTLQQTPSLDASSAL 319
+PR G DG L QTPS A+ AL
Sbjct: 83 FPRRGEDGVHLLSQTPSSPAAWAL 106
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -1
Query: 499 GATTILSNTVCSFVTRLKTAA*SVGDGHSSVCLFRRA*VSTESSGAGLHLGKAGSANKRS 320
G+ LSNT CS V + SV +S R+ +T + G +G G+ +
Sbjct: 28 GSELHLSNTTCSKVKMVSQVRPSVNQMETSDDATRQVIPNTRNEG---RMGPTGNTGLKR 84
Query: 319 KGGRSIKTRGLL 284
+ GR + G L
Sbjct: 85 RKGRGLTINGTL 96
>10_08_0851 -
21065832-21065948,21066361-21066705,21067181-21067489,
21067574-21067648,21067754-21067917,21067994-21068432
Length = 482
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 269 GASTLQQTPSLDASSALRPFISRTRFS*MQTGSRRLRAHSGP 394
G + TPS+DA + R F + FS GS HSGP
Sbjct: 20 GCCSSSTTPSMDAVNLSRTFSDVSSFSEEHGGSGSSVDHSGP 61
>09_02_0517 + 10139859-10140245
Length = 128
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 218 GARHRSWWTRYPRPGRDGASTLQQTPSLDASSA 316
G RHR+ W R+PR R G +T + AS A
Sbjct: 6 GGRHRARWRRWPR-ARRGRTTAAKEELAAASMA 37
>05_04_0375 +
20750170-20751011,20751707-20751865,20752894-20753146,
20753287-20753316
Length = 427
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 224 RHRSWWTRYPRPGRDGASTLQQ 289
R R WW P P GAS+L++
Sbjct: 33 RRRWWWWAAPLPSASGASSLER 54
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 312 PPFDLLLAEPAFPRCKPAPD 371
PPF L LA P FP P PD
Sbjct: 36 PPFLLDLASPPFPPKNPRPD 55
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 202 IYFRLTFSLCFALGMLMT*KLCFHKFFFNYFYARAYIVF 86
I R + S+ F + L FH +FF+Y Y +Y+ F
Sbjct: 528 ISVRTSISMQFFPRFFLLYFLVFHIYFFSYTYGFSYLAF 566
>03_04_0124 - 17480282-17480647
Length = 121
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 221 ARHRSWWTRYPRPGRDGASTLQQT 292
A R WW +PGRDGA+ L +T
Sbjct: 2 AELRRWWED-AQPGRDGAAALVET 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,949
Number of Sequences: 37544
Number of extensions: 281793
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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