Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18a09
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 33 0.035
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 30 0.33
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 1.3
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 1.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.1
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 26 4.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 7.1
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 9.4
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 9.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.4
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 9.4
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 9.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.4
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 9.4
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 25 9.4
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 33.1 bits (72), Expect = 0.035
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = +3
Query: 294 KALHTKGE--RELVEFLTEEIVAERKA--QKVKSLPAEVEGFTVKGDGAEVVLTKQLKDE 461
++ HT G +L+ L+ EI E+ ++ P + V+G A VVL + DE
Sbjct: 49 RSSHTAGNPRSKLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGS-AVVVLKAKHGDE 107
Query: 462 TIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFE 575
IR+T NV+ V D E+Q+F+E + + +
Sbjct: 108 NIRITMNVSQDVT------DAVPEEQDFTEFEDEQELQ 139
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 29.9 bits (64), Expect = 0.33
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 330 EFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHTVDSD- 506
E L E+ ER Q +S+P + GF D + +QL+ I N T D D
Sbjct: 128 EVLPSEVELERTYQDQQSVPDAISGFQPDMDPRLREVLEQLEHSDI----NDEETSDFDE 183
Query: 507 DFEGDVQTEKQEFSEMRSKPQFE 575
+FE V + K + SE ++P E
Sbjct: 184 EFEKLVASGKADESEFYAQPFVE 206
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 309 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLK 455
K ERE+ E L E+ K V +LPA V T KGD + LTK +
Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGDYKD--LTKHFR 190
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -2
Query: 364 LRSATISSVRNSTSSLSPFV*SAFNPQPQLQVLEWLCSKLVEARVPSNLREQLMCHIPLV 185
L SAT S+ S SS + F+ ++ P E+ K + R P NL + +PLV
Sbjct: 4 LTSATDSASLESDSSRNQFIINSLLPWYSCSEHEFPHRKARKRRSPKNLDWSVSVQMPLV 63
Query: 184 KSR 176
S+
Sbjct: 64 TSK 66
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 484 TLNVTRIVSSLSCFVKTT-SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 311
+LN T ++ S + +T S+ +P T ST+A SAT SS + +TSSL P
Sbjct: 231 SLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA------SATSSSAQYNTSSLLP 283
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 463 VSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 326
V+ LS K+ S V S+++G ++ + SA ISS++NST
Sbjct: 1347 VNMLSHKRKSASTSDRRFVNASSTSGMNMPISSSISAKISSIQNST 1392
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 473 DTNCFIFKLLC*NNFSTVSLYSKAFDFSRERL--DLLCFAFSNYFFCQELY 327
+TN F++ + C + TVSL S A + D +C+ + N EL+
Sbjct: 15 ETNDFLYLMRCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELF 65
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 480 NVNHTVD-SDDFEG-DVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQD 632
N H+V S DF +V++E + +E S +FE + T LGF+ S LQD
Sbjct: 5 NTLHSVSISTDFPSPNVESEAADVNEYSSTSKFETLGNQSSTNLGFSNS-LQD 56
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -3
Query: 339 SGTLPVLFHLSCEAPSTRSRSCKYWNGCVASWWKPGSHLTFES 211
SG LP L + C + RSRSC C + S L F S
Sbjct: 392 SGVLPFLTNGGCYSYICRSRSCPSKYQCYSCRCARNSSLEFTS 434
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 175 FTA-VCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPA 68
FTA VCV NPL+ ++ V ++ + +T P++F A
Sbjct: 101 FTAWVCV---NPLEKSIFGKVAFSVTIGITCPIVFIA 134
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -3
Query: 315 HLSCEAPSTRSRSC-KYWNGCVASWWKPGSHLTFESSS 205
HLSCE PS C K N ++S F S S
Sbjct: 111 HLSCELPSEHREKCLKRRNSSLSSNLHANKRFLFNSQS 148
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 477 FNVNHTVDSDDFEGDVQTEKQEFSEMRS 560
FN NHT+D D + ++ + E+ S
Sbjct: 676 FNSNHTIDCDSLQNVIKMLESSIDEISS 703
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 9.4
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Frame = -2
Query: 463 VSSLSCFVKTTSAPSPFTVKPSTSAG--RDL----TFCA---LRSATISSVRNSTSSLSP 311
++S+S +T PS V+PSTS D+ +F A L S +IS+ N+ S +P
Sbjct: 137 MTSMSSITSSTPTPSQLPVRPSTSLSFFDDIPLGPSFSAETILSSLSISTSNNAMSKTTP 196
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 175 FTAVCVRLTN-PLKFAVLTHVCSTLWVALTMPL 80
FT + + N P+ + VCS W+ L+ PL
Sbjct: 257 FTPILYKTNNNPIILPITVTVCSCWWLILSTPL 289
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 460 SSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLS 314
S+++ T S P P T PST +T +L S +S T+S S
Sbjct: 680 SNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTS 728
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 347 FFCQELYQFSFTFRVKRL 294
F CQ LY+FS +FR KR+
Sbjct: 2 FSCQSLYKFSHSFR-KRI 18
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 429 EVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTE 533
E + K +D+ + +VNH++DSDD Q E
Sbjct: 228 ERIQKKAFEDKGLVSDQDVNHSIDSDDQSEHEQAE 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,223
Number of Sequences: 5004
Number of extensions: 49166
Number of successful extensions: 168
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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