Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18a09
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0072 - 31469595-31469684,31469762-31469848,31469968-314700... 37 0.016
08_02_1354 - 26337628-26338540,26339638-26339981 32 0.34
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 30 1.4
07_03_0571 - 19602755-19603831 29 2.4
05_01_0096 + 654074-654499,654673-655326 29 2.4
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 29 3.2
07_01_0945 - 7973736-7974275,7974446-7974580 29 3.2
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 28 7.4
07_03_0938 + 22754244-22755569 27 9.7
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890... 27 9.7
04_04_0056 + 22406872-22407258,22408405-22409310 27 9.7
01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525... 27 9.7
>03_06_0072 -
31469595-31469684,31469762-31469848,31469968-31470036,
31470117-31470185,31470269-31471306
Length = 450
Score = 36.7 bits (81), Expect = 0.016
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = -2
Query: 439 KTTSAPSPFTVKPSTSA-GRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQ---PQLQ 272
++ + +P PS+ A G + F + + V S+ S SP + SAFNP P LQ
Sbjct: 103 RSCATKAPVNDPPSSLAIGLLMVFTSGMGSATGRVGASSLSASPSISSAFNPAALLPFLQ 162
Query: 271 VLEWL-CSKLVEARVPS 224
+WL CS L+ + PS
Sbjct: 163 ATKWLPCSDLITSAAPS 179
>08_02_1354 - 26337628-26338540,26339638-26339981
Length = 418
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 427 APSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 311
+PSP T PST+ GRD C R + + N +L+P
Sbjct: 168 SPSPATRSPSTTLGRDRYCCLTREDIVRFLINCLGALAP 206
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 324 LVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQL 452
LV F+ ++ E K + ++ L E+E F + +G+EV L++ +
Sbjct: 461 LVGFIFTLLLPESKGKSLEDLTGEIEEFQEEDEGSEVALSRPI 503
>07_03_0571 - 19602755-19603831
Length = 358
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/104 (23%), Positives = 44/104 (42%)
Frame = +3
Query: 204 MSCSRRLDGTLASTSLLHNHSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQKVKS 383
MSCS L +S++L + SCG + + R + L I + R QK+
Sbjct: 1 MSCSH-LSTAWSSSALATRRRSAPSCGSSGRL---QVVRCSLRELRSRIDSVRNTQKITE 56
Query: 384 LPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHTVDSDDFE 515
V V+ VV ++ + + V +N+N + ++D +
Sbjct: 57 AMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTEDID 100
>05_01_0096 + 654074-654499,654673-655326
Length = 359
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +3
Query: 288 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETI 467
G LH G+ L L ++A P V G + D +VLT + +
Sbjct: 100 GQPPLHRAGDSRLRMSLN--VLAVNIVSSDVGYPVLVYGTVIARDDETLVLTGPTRSIEV 157
Query: 468 R--VTFNVNHTVDSDDFEGDVQTEKQEFSE 551
V F VN + ++ +GDV + +EFS+
Sbjct: 158 SDSVFFEVNLKLKEEEDDGDVVVDDREFSK 187
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 498 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAA 644
D D + Q E ++ + P FE+ V+GD + S Q+P A
Sbjct: 1004 DEDSYTAPCQLEVDSMAQTKEVPSFEISEVQGDGIVVHPISLDQEPSNA 1052
>07_01_0945 - 7973736-7974275,7974446-7974580
Length = 224
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 306 CEAPSTRSRSCKYWNGCVASWWKPGSHLTFESSSCAI 196
C P S + W GC A+W P + L+ S S A+
Sbjct: 166 CRWPRVASTGARQWQGCHAAWLSPVAPLS-SSLSAAV 201
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 439 KTTSAPSPFTVKPSTSAGRDLTFCALRSATISS 341
+ + PS + + + GR LTF LRSA +S+
Sbjct: 41 RADACPSAVALADAAAGGRALTFAELRSAVLST 73
>07_03_0938 + 22754244-22755569
Length = 441
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 206 ELLSKVRWDPGFHQLATQPFQYLQLRLRVEGASHER*KRTGR 331
+++ ++W FH LA++P + LR+ GAS + + TGR
Sbjct: 169 DIMQGLQWPGLFHILASRPTKPRSLRITGLGASLDVLEATGR 210
>04_04_0308 +
24286923-24286927,24288430-24288907,24288980-24289099,
24289182-24289235,24289467-24289579,24289799-24290011,
24290123-24290201,24290323-24290376,24290448-24290522,
24291029-24291193,24291843-24291941,24292186-24292241,
24292331-24292433,24293289-24293417,24293657-24293835,
24293953-24293977,24294060-24294175,24294252-24294342
Length = 717
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = -1
Query: 578 NLKLRFGT---HLRELLLLSLN---ITLKVIRVHSVINVECDTNCFIFKLLC*NNFSTVS 417
NL+L T L++L+LL + + ++ I V+ E D F+ K LC NN + S
Sbjct: 317 NLQLSISTSDNRLKDLMLLLKSPPFVDMRSIIVYCKFQAETD---FVSKYLCDNNITAKS 373
Query: 416 LYSKAFDFSRERL-DLLC 366
+S +R R+ +L C
Sbjct: 374 YHSGLLIKNRSRVQELFC 391
>04_04_0056 + 22406872-22407258,22408405-22409310
Length = 430
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 463 VSSLSCFVK-TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSL 317
+SS SC TT+AP P T + +AG CA +AT + V L
Sbjct: 29 LSSSSCAASPTTAAPVPGTAPRAAAAGDGDEGCAAAAATPADVGGDEDDL 78
>01_06_0179 +
27250706-27251593,27252172-27252462,27252510-27252575,
27252732-27252871,27254709-27254814,27254898-27254990,
27255398-27255487,27256403-27256525,27256708-27256781,
27256878-27256932,27257087-27257322,27257959-27258088,
27258170-27258272,27258428-27258525,27258973-27259038,
27259252-27259419
Length = 908
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 292 NPQPQLQVLEWLCSKL-VEARVPSN-LREQLMCHIPLVKS 179
N P++ ++ W C K+ A +P L E L+ IPL+ S
Sbjct: 525 NLNPEVVIMHWACEKITASAAIPDTVLLEGLLDKIPLLLS 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,791,456
Number of Sequences: 37544
Number of extensions: 339051
Number of successful extensions: 999
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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