Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18a05
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0105 - 823302-823770,823902-824006,824149-824540                 29   4.1  
11_01_0105 - 786623-787091,787229-787333,787476-787864                 28   5.5  
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    28   7.2  

>12_01_0105 - 823302-823770,823902-824006,824149-824540
          Length = 321

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 536 CSNIMVECSIIYIVSDCN 589
           CSNI V CS   +V DCN
Sbjct: 262 CSNISVTCSSSVVVEDCN 279


>11_01_0105 - 786623-787091,787229-787333,787476-787864
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 536 CSNIMVECSIIYIVSDCN 589
           CSNI V CS   +V DCN
Sbjct: 261 CSNISVTCSPSVVVEDCN 278


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 191 ILISYSFFATIWNRNCTIVPW 253
           I+I   F+  +WN NCT+  W
Sbjct: 259 IVIDDIFYEQVWNSNCTLRDW 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,200
Number of Sequences: 37544
Number of extensions: 238467
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)