Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18a05
         (643 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047439-1|AAH47439.1|  198|Homo sapiens transmembrane protein 1...    81   4e-15
AC093159-1|AAY24170.1|   92|Homo sapiens unknown protein.              51   4e-06
CR457166-1|CAG33447.1|   87|Homo sapiens MGC:13379 protein.            36   0.092
BC011010-1|AAH11010.1|   87|Homo sapiens HSPC244 protein.              36   0.092
AC107083-1|AAY24048.1|  106|Homo sapiens unknown protein.              35   0.28 
BC008671-1|AAH08671.2|  160|Homo sapiens transmembrane protein 8...    34   0.37 

>BC047439-1|AAH47439.1|  198|Homo sapiens transmembrane protein 17
           protein.
          Length = 198

 Score = 80.6 bits (190), Expect = 4e-15
 Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
 Frame = +3

Query: 153 IFQKFDQLSHLTKYLSATVFLLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQMPL 332
           +  K+  L    K++  TV +L++ IE +RLYLG  GNL  +VPELA F +L++L+Q+PL
Sbjct: 65  LHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLLQLPL 124

Query: 333 VSFFLFHPYLLSTPTEITLHAMFWMTTIIEIVYGFRAL-KQASSLAKSIYL 482
           + F LF+  L + P E  +H +F +    ++V  F  L K  + LA   +L
Sbjct: 125 ILFLLFNEGLTNLPLEKAIHIIFTLFLAFQVVAAFLTLRKMVNQLAVRFHL 175


>AC093159-1|AAY24170.1|   92|Homo sapiens unknown protein.
          Length = 92

 Score = 50.8 bits (116), Expect = 4e-06
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +3

Query: 279 VPELAVFLMLTILMQMPLVSFFLFHPYLLSTPTEITLHAMFWMTTIIEIVYGFRAL-KQA 455
           VPELA F +L++L+Q+PL+ F LF+  L + P E  +H +F +    ++V  F  L K  
Sbjct: 1   VPELAGFWLLSLLLQLPLILFLLFNEGLTNLPLEKAIHIIFTLFLAFQVVAAFLTLRKMV 60

Query: 456 SSLAKSIYL 482
           + LA   +L
Sbjct: 61  NQLAVRFHL 69


>CR457166-1|CAG33447.1|   87|Homo sapiens MGC:13379 protein.
          Length = 87

 Score = 36.3 bits (80), Expect = 0.092
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 207 VFLLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQMPLVSFFLFHPYLL 365
           + LL  GIE++RL+ G  GNL  R   L++ + LT    M    + L   Y+L
Sbjct: 1   MLLLYLGIEVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVL 53


>BC011010-1|AAH11010.1|   87|Homo sapiens HSPC244 protein.
          Length = 87

 Score = 36.3 bits (80), Expect = 0.092
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 207 VFLLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQMPLVSFFLFHPYLL 365
           + LL  GIE++RL+ G  GNL  R   L++ + LT    M    + L   Y+L
Sbjct: 1   MLLLYLGIEVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVL 53


>AC107083-1|AAY24048.1|  106|Homo sapiens unknown protein.
          Length = 106

 Score = 34.7 bits (76), Expect = 0.28
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 153 IFQKFDQLSHLTKYLSATVFLLLSGIEIVRLYLGRYGNL 269
           +  K+  L    K++  TV +L++ IE +RLYLG  GNL
Sbjct: 65  LHMKYSILPDYYKFIVITVIILITLIEAIRLYLGYVGNL 103


>BC008671-1|AAH08671.2|  160|Homo sapiens transmembrane protein 80
           protein.
          Length = 160

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
 Frame = +3

Query: 153 IFQKFDQLSHLTKYLSATVFLL-LSGI-EIVRLYLGRYGNLSCRVPELAVFLMLTILMQM 326
           I  K    S+  +YL   + LL L GI E VRLYLG  GNL+     LA  L LT    +
Sbjct: 58  ITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALTAGTAL 117

Query: 327 PLVSFFLFHPYLL--STPTEITLHAMFWMTTIIEIV 428
               F L+   +L        TL A+  +  ++++V
Sbjct: 118 LSAHFLLWQALVLWADWALSATLLALHGLEAVLQVV 153


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,576,102
Number of Sequences: 237096
Number of extensions: 1394639
Number of successful extensions: 1975
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1975
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)