Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18a05
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-1|AAA50687.2|  145|Caenorhabditis elegans Hypothetical pr...    47   1e-05
Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2 prot...    31   0.70 
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical p...    29   3.7  

>U00047-1|AAA50687.2|  145|Caenorhabditis elegans Hypothetical
           protein ZK418.3 protein.
          Length = 145

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 29/89 (32%), Positives = 47/89 (52%)
 Frame = +3

Query: 150 TIFQKFDQLSHLTKYLSATVFLLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQMP 329
           +++ K   LS   + ++ +  L+  G E VRL LG YGNL+  +  L  FL+ TI++Q+P
Sbjct: 9   SLYFKHSLLSLTYQVIAFSACLVHLGSEGVRLGLGFYGNLAENMSALFGFLITTIIIQIP 68

Query: 330 LVSFFLFHPYLLSTPTEITLHAMFWMTTI 416
           L  F   +   L+ P E   + M  +  I
Sbjct: 69  LTVFLAVNGSFLNLPLEYVFYTMITVFAI 97


>Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical
           protein C56A3.7 protein.
          Length = 351

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 24/98 (24%), Positives = 41/98 (41%)
 Frame = +3

Query: 144 NTTIFQKFDQLSHLTKYLSATVFLLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQ 323
           NT+ F+ F++ S     ++    L     EIVR+Y   Y  L+     +  FL   +   
Sbjct: 224 NTSFFEVFNEPSEQYHSIACVWTLSFKIFEIVRIY--SYKILTLIFGLIIAFLGGILFAL 281

Query: 324 MPLVSFFLFHPYLLSTPTEITLHAMFWMTTIIEIVYGF 437
              ++ ++F P L+ T        + W   +I IV  F
Sbjct: 282 FAFLNIWIFRPILILTRMAFAQIVLIWPMFLIYIVRPF 319


>U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2
           protein.
          Length = 351

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 24/98 (24%), Positives = 41/98 (41%)
 Frame = +3

Query: 144 NTTIFQKFDQLSHLTKYLSATVFLLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQ 323
           NT+ F+ F++ S     ++    L     EIVR+Y   Y  L+     +  FL   +   
Sbjct: 224 NTSFFEVFNEPSEQYHSIACVWTLSFKIFEIVRIY--SYKILTLIFGLIIAFLGGILFAL 281

Query: 324 MPLVSFFLFHPYLLSTPTEITLHAMFWMTTIIEIVYGF 437
              ++ ++F P L+ T        + W   +I IV  F
Sbjct: 282 FAFLNIWIFRPILILTRMAFAQIVLIWPMFLIYIVRPF 319


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 288 LAVFLMLTILMQMPLVSFFLFHPYLLSTPTEITLHAMFWMTTIIEI 425
           +A+F +L+ L+  P+V       YL ST        +FW+T  I +
Sbjct: 166 MAIFSVLSALLHFPIVKKIRALTYLDSTQLSTLYTYIFWLTIFIVV 211


>Z49909-15|CAF31470.1|  697|Caenorhabditis elegans Hypothetical
           protein C14A4.12b protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 165 FDQLSHLTKYLSATVFLLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQM 326
           + QL H+   LS T + L     +V  +L RY   SC +  L+V   L IL Q+
Sbjct: 568 YSQLFHVVLALSITSYALFQ--VLVAEHLSRYPIFSCALVILSVIRALDILTQI 619


>Z49909-14|CAA90116.2|  717|Caenorhabditis elegans Hypothetical
           protein C14A4.12a protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 165 FDQLSHLTKYLSATVFLLLSGIEIVRLYLGRYGNLSCRVPELAVFLMLTILMQM 326
           + QL H+   LS T + L     +V  +L RY   SC +  L+V   L IL Q+
Sbjct: 588 YSQLFHVVLALSITSYALFQ--VLVAEHLSRYPIFSCALVILSVIRALDILTQI 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,153
Number of Sequences: 27780
Number of extensions: 245092
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)