Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18a04
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 29 0.58
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 29 0.58
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 28 1.0
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 28 1.0
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 28 1.0
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 28 1.3
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 5.4
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 25 7.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.1
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 25 7.1
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 9.4
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 29.1 bits (62), Expect = 0.58
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 290 KGLLNAIPYSGMLLSTVIAGFLTDTFGRK 376
+G++NA G ++ ++ GFL D FGRK
Sbjct: 85 RGVVNAATNIGNIMGQLLFGFLGDFFGRK 113
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 29.1 bits (62), Expect = 0.58
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = +2
Query: 176 IRLLAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLLNAIPYSGMLLSTVIAGFL 355
IRL S + G+ S S+A + A LN+S Q LL S LL TVI +L
Sbjct: 329 IRLFLFSRLFINCGIQTSLSSAVIFGKAR--LNLSNFQLTLLGMGISSFALLGTVIIPYL 386
Query: 356 TDTF 367
T+ F
Sbjct: 387 TEYF 390
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 290 KGLLNAIPYSGMLLSTVIAGFLTDTFGRK 376
+GL+NA G + ++ GF+ D FGRK
Sbjct: 95 RGLVNASANIGNIFGQLLFGFMGDFFGRK 123
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 293 GLLNAIPYSGMLLSTVIAGFLTDTFGRK 376
GL+NA G + ++ GF+ D FGRK
Sbjct: 91 GLVNAAANIGNVFGQILFGFMGDFFGRK 118
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 290 KGLLNAIPYSGMLLSTVIAGFLTDTFGRK 376
+GL+NA G + ++ GF+ D FGRK
Sbjct: 95 RGLVNAASNIGNIFGQLMFGFMGDFFGRK 123
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 320 GMLLSTVIAGFLTDTFGRKTFVTL 391
G LL +IAG L D FGRK + +
Sbjct: 139 GALLGGIIAGALADFFGRKPVIAI 162
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 527 IPLSMLPPH*RMLQIEY 477
IPL+ LPPH R+ +E+
Sbjct: 193 IPLTFLPPHVRIANVEF 209
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 525 SVVNVTAALKDVANRIPSKNFAVIN 451
++ +V AA++D+A R P +F +N
Sbjct: 78 NMASVEAAVQDIATRFPKLDFVYLN 102
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/41 (21%), Positives = 20/41 (48%)
Frame = +3
Query: 90 ANETMTSRLQ*RCKKLMKRTSHAVSGGSTSGYWLYRLWASW 212
+N+ + C ++ SH++ + G W++ + ASW
Sbjct: 895 SNDNLGQNNDNHCVLCLQSASHSLMKKTVEGNWVHLICASW 935
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 208 EAHKRYSQ*P-DVEPPETACDVRFINFLHRYWSLDVIVSFAD 86
E H S P D++ C I FLH++W+ + +F D
Sbjct: 374 ETHGTASNLPIDIKNEIVLCHTVTIEFLHQFWNALLNTTFPD 415
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 197 FVGFVAGVLVSNS-TAYLLPSAECDLNMSLVQKGLLNAIPYSGMLLSTVIAGFLTDTFGR 373
F F++ + SN T++L S ++MS + LN +S M + +++GFL FGR
Sbjct: 360 FTYFMSYYIFSNFLTSFLQVSYGLSIDMSSLT---LNVFVFS-MTTTAILSGFLMKRFGR 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,662
Number of Sequences: 5004
Number of extensions: 53590
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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