Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18a04
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 53 2e-07
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 52 5e-07
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 49 3e-06
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 43 2e-04
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758... 33 0.26
02_01_0094 - 667361-668962 31 1.0
02_01_0093 + 655420-657021 31 1.0
11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931 29 2.4
02_04_0615 - 24410124-24410290,24410592-24410623,24410717-244108... 29 4.2
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989 28 5.6
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316... 28 5.6
05_05_0186 + 23071429-23072034,23072182-23072331,23073247-23073552 28 5.6
11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747 28 7.4
05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110 28 7.4
12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387 27 9.7
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 9.7
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/115 (26%), Positives = 57/115 (49%)
Frame = +2
Query: 137 NEAYIACGFGWFHIRLLAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLLNAIPY 316
+EA GFG F + +LA + +G+V + +++ P + N+S + LL+++ +
Sbjct: 202 DEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVREEWNISAENESLLSSVVF 261
Query: 317 SGMLLSTVIAGFLTDTFGRKTFVTLXXXXXXXXXXXSASSQTYEVLITAKFFEGI 481
+GML+ GF++D +GR+ + SA S Y L+ +F GI
Sbjct: 262 AGMLIGASGWGFVSDKYGRRICLLFSTLFASGMGFLSAFSPNYSCLLALRFLVGI 316
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/83 (27%), Positives = 48/83 (57%)
Frame = +2
Query: 137 NEAYIACGFGWFHIRLLAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLLNAIPY 316
++A GFG F +LA + VG+VA + +++ PS + + +S +GL++++ +
Sbjct: 20 DDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEWGVSGAAEGLVSSVVF 79
Query: 317 SGMLLSTVIAGFLTDTFGRKTFV 385
+GML+ + G ++D +GR +
Sbjct: 80 AGMLIGACLGGLISDRYGRSFLI 102
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/85 (24%), Positives = 49/85 (57%)
Frame = +2
Query: 122 AMQEINEAYIACGFGWFHIRLLAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLL 301
A +++A ++ GFG + I +L+ + VG +A + +++ PS + + ++ Q+ ++
Sbjct: 8 ATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMI 67
Query: 302 NAIPYSGMLLSTVIAGFLTDTFGRK 376
+I + GML+ G ++D +GR+
Sbjct: 68 TSIVFVGMLIGAYTWGVVSDNYGRR 92
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/89 (23%), Positives = 47/89 (52%)
Frame = +2
Query: 119 IAMQEINEAYIACGFGWFHIRLLAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGL 298
++ ++EA I+ GFG F +LA S + ++ + +++ S + + +S + L
Sbjct: 29 VSTYTVDEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESL 88
Query: 299 LNAIPYSGMLLSTVIAGFLTDTFGRKTFV 385
+ ++ + GML+ G ++D +GR+ V
Sbjct: 89 ITSVVFVGMLVGAYSWGIVSDNYGRRQAV 117
>10_08_1053 -
22575281-22575409,22575516-22575653,22575786-22575884,
22576281-22576361,22577171-22577233,22577473-22577520,
22577622-22577990,22578082-22578183,22578290-22578414,
22578500-22578566,22578817-22578895,22578928-22579079,
22579182-22579223
Length = 497
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +2
Query: 320 GMLLSTVIAGFLTDTFGRKTFVTLXXXXXXXXXXXSASSQTYEVLITAKFFEGILFATSF 499
G L+ +++A + D GR+ + L +A++ + +++ +FF GI +
Sbjct: 98 GALIGSILAFNIADFLGRRRELILSSVSYLIGALLTAAAPNFPIMVVGRFFYGIGIGLAM 157
Query: 500 SAAVTLTTEYCHNRIR 547
AA E ++IR
Sbjct: 158 HAAPMYIAETAPSQIR 173
>02_01_0094 - 667361-668962
Length = 533
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/119 (19%), Positives = 45/119 (37%)
Frame = +2
Query: 173 HIRLLAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLLNAIPYSGMLLSTVIAGF 352
H+R +S++ F + + + + A L+P +LN++ G SG + S + G
Sbjct: 62 HMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMGA 121
Query: 353 LTDTFGRKTFVTLXXXXXXXXXXXSASSQTYEVLITAKFFEGILFATSFSAAVTLTTEY 529
+ D G + + + I +F G AT S ++T +
Sbjct: 122 ICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF 180
>02_01_0093 + 655420-657021
Length = 533
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/119 (19%), Positives = 45/119 (37%)
Frame = +2
Query: 173 HIRLLAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLLNAIPYSGMLLSTVIAGF 352
H+R +S++ F + + + + A L+P +LN++ G SG + S + G
Sbjct: 62 HMRTFHLSWISFFSCFVSTFAAAPLVPIIRDNLNLTKADIGNAGVASVSGSIFSRLAMGA 121
Query: 353 LTDTFGRKTFVTLXXXXXXXXXXXSASSQTYEVLITAKFFEGILFATSFSAAVTLTTEY 529
+ D G + + + I +F G AT S ++T +
Sbjct: 122 ICDMLGPRYGCAFLIMLAAPTVFCMSLIDSAAGYIAVRFLIGFSLATFVSCQYWMSTMF 180
>11_06_0492 - 24304313-24305263,24305375-24305721,24305793-24305931
Length = 478
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 323 MLLSTVIAGFLTDTFGRKTFVTLXXXXXXXXXXXSASSQTYEVLITAKFFEGI 481
ML S + AG+ DT GR+ + L + TY L+ A+F +
Sbjct: 80 MLASILAAGWAADTLGRRGTIVLANAFLMAGALAMSLGATYAALMAARFVTSV 132
>02_04_0615 -
24410124-24410290,24410592-24410623,24410717-24410811,
24413636-24413706,24414278-24414410,24414488-24414551,
24414628-24414690,24414784-24414924,24415130-24415203,
24415346-24415470,24415545-24415686,24415775-24415777
Length = 369
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 558 KTWSLIRLWQYSVVNVTAALKDV 490
K W L+ LW + +N+ AALK +
Sbjct: 4 KEWPLVPLWSINDLNIAAALKSI 26
>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
Length = 476
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/87 (24%), Positives = 33/87 (37%)
Frame = +2
Query: 266 DLNMSLVQKGLLNAIPYSGMLLSTVIAGFLTDTFGRKTFVTLXXXXXXXXXXXSASSQTY 445
D+ +S Q +L ML+S + AG+ D GR+ + L + TY
Sbjct: 59 DVGLSDAQIEVLAGSMNVFMLVSILAAGWAADVLGRRGTLVLANAYLMAGALAMSLGATY 118
Query: 446 EVLITAKFFEGILFATSFSAAVTLTTE 526
L+ A+F + S A E
Sbjct: 119 AALMAARFVTSVGVGFSLVVAPVYNAE 145
>10_08_0784 +
20529526-20529604,20529996-20530562,20530687-20531639,
20532292-20532479,20532578-20533013
Length = 740
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/97 (23%), Positives = 38/97 (39%)
Frame = +2
Query: 239 AYLLPSAECDLNMSLVQKGLLNAIPYSGMLLSTVIAGFLTDTFGRKTFVTLXXXXXXXXX 418
A L E +L + +GL+ A+ G + T +G + D+FGR+ +
Sbjct: 28 AVLYIKKEFNLQSEPLIEGLIVAMSLIGATIITTFSGAVADSFGRRPMLIASAVLYFVSG 87
Query: 419 XXSASSQTYEVLITAKFFEGILFATSFSAAVTLTTEY 529
+ VL+ A+ +G AVTL Y
Sbjct: 88 LVMLWAPNVYVLLLARLIDGF----GIGLAVTLVPLY 120
>05_05_0186 + 23071429-23072034,23072182-23072331,23073247-23073552
Length = 353
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 191 ISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLLNAIPYSGML-LSTVIAGFLTDT 364
+S F GV+++ ++LP+A L+ + G P++GM+ + + I + DT
Sbjct: 83 LSVKAFAGGVILATGLVHILPAAFEALSSPCLVGGPWKRFPFAGMVAMVSAIGTLIVDT 141
>11_06_0491 - 24298220-24299058,24299085-24299519,24299606-24299747
Length = 471
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = +2
Query: 323 MLLSTVIAGFLTDTFGRKTFVTLXXXXXXXXXXXSASSQTYEVLITAKFFEGILFATSFS 502
ML+S + AG+ D GR+ + L + TY L+ A+F + S
Sbjct: 81 MLVSILAAGWAADVLGRRGTLVLANAFLMAGALAMSLGATYAALMAARFVTSVGVGFSLV 140
Query: 503 AAVTLTTE 526
A E
Sbjct: 141 VAPVYNAE 148
>05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110
Length = 286
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 185 LAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLLNAIPYSGML-LSTVIAGFLTD 361
L + F AGV+++ + ++LP + L + G P++G++ + +A L D
Sbjct: 75 LFFALKAFAAGVILATAFVHILPVSFDKLGSPCLVDGPWRKYPFTGLVAMLAAVATLLLD 134
Query: 362 TFGRKTFV 385
T F+
Sbjct: 135 TIATGYFL 142
>12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387
Length = 487
Score = 27.5 bits (58), Expect = 9.7
Identities = 25/104 (24%), Positives = 45/104 (43%)
Frame = +2
Query: 170 FHIRLLAISFVGFVAGVLVSNSTAYLLPSAECDLNMSLVQKGLLNAIPYSGMLLSTVIAG 349
F +LA S + G V+ ++ + AE DL +S Q +L+ L+ ++AG
Sbjct: 32 FFCAVLA-SMTSVLMGYNVAVTSGAQIFMAE-DLGVSDAQIEVLSGAINIYSLVGALLAG 89
Query: 350 FLTDTFGRKTFVTLXXXXXXXXXXXSASSQTYEVLITAKFFEGI 481
+ +D GR+ + L + + Y L+ +F GI
Sbjct: 90 WTSDRLGRRLTIVLTNGFFLAGPLVMSLAGGYAALMAGRFVAGI 133
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/78 (21%), Positives = 32/78 (41%)
Frame = +2
Query: 314 YSGMLLSTVIAGFLTDTFGRKTFVTLXXXXXXXXXXXSASSQTYEVLITAKFFEGILFAT 493
Y ++++++AG LT T GR+ + + + ++ +LI + G+
Sbjct: 94 YLSTMVASLVAGHLTKTLGRRNSLLIAGVLFFAGTLLNLAAVNISMLIIGRILLGVAVGF 153
Query: 494 SFSAAVTLTTEYCHNRIR 547
S AA E R R
Sbjct: 154 SSLAAPVYLAEISPARWR 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,371,535
Number of Sequences: 37544
Number of extensions: 378124
Number of successful extensions: 967
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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