Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18a01
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 175 3e-45
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 27 2.5
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 26 3.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 26 4.4
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 26 4.4
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 26 4.4
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.9
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 5.9
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 175 bits (427), Expect = 3e-45
Identities = 85/144 (59%), Positives = 106/144 (73%)
Frame = +2
Query: 134 ETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIV 313
+T+ +D+ W KI FT DD+ LEES FATLFPKYRE+YL+E WP V + L + I
Sbjct: 27 DTDDIDH-W--KIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGIT 83
Query: 314 AELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEXGCDIIKINS 493
LDL+EGS+TVKTTRKT+DPY I+ ARD +KLL+RSVPF QA +++ D CDIIKI +
Sbjct: 84 CVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGN 143
Query: 494 FVRKKETFLKRRQRLIGPQGVTLK 565
+R KE F+KRRQRLIG G TLK
Sbjct: 144 ILRNKERFVKRRQRLIGTNGQTLK 167
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 86 SLLATLNLIKTNMEVEETNSVDNAWAMKIP 175
S L TL+ I + ET ++AW KIP
Sbjct: 221 SNLVTLSKIMRQADASETGGQNSAWKQKIP 250
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 215 ESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPY 379
ES+F+ L +R+ Y+K I ++ H V +L+ + RK ++ Y
Sbjct: 138 ESRFSRLEEAFRDFYIKNLEKTEDLIRTDSHFVLNKELLSFRNDYEHRRKHYEKY 192
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 4.4
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 77 KIISLLATLNLIKTNMEVEETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQ 256
K+ LL L + K + + + + W + P F+P + + + + P + +
Sbjct: 420 KLRLLLHELLVKKKALPELDKDLLKFVWVVDFPLFSPTEEKNQSITSTHHPFTAPHWDDV 479
Query: 257 YLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKL-LSRSVPF 433
+L E PL + L +V ++L GS+ + +++ +D +KL +R F
Sbjct: 480 HLLEKKPLSVRGLHYDIVVNGIELGGGSIRIH--NPDIQRFVL---KDVLKLPENRYATF 534
Query: 434 EQASRVLDDEXGC 472
E RVL GC
Sbjct: 535 EHLIRVLSS--GC 545
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 230 TLFPKYREQYLKECWPLVQKILSE 301
T+ P Y QYLK+ L+QK LSE
Sbjct: 3 TIVP-YSHQYLKDICQLIQKDLSE 25
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 227 ATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEG 337
A + P+Y+EQY +E + K+++E I + D+ +G
Sbjct: 290 ANILPQYQEQYFEE----MPKLIAEGKIKYKCDVYDG 322
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 5.9
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = +2
Query: 77 KIISLLATLNLIKTNMEVEE-TNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYRE 253
K++SL+ + N I + E N W+ + F +DN L K +
Sbjct: 356 KLVSLIESFNNITMESVLTECLNDWSTTWS-SVSTFASEDNKLEELNRLKSLLSISSHLP 414
Query: 254 QYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYI 382
+ L+ PL+ ILS+ +V + I+ + T T + YI
Sbjct: 415 KTLQLMEPLLDGILSQ--LVPKSSGIDSNSQKLLTSSTSNEYI 455
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 155 AWAMKIPKFTPDDNPHGLL 211
AW P TPD +P GLL
Sbjct: 553 AWGFMCPVHTPDGSPCGLL 571
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,015
Number of Sequences: 5004
Number of extensions: 35296
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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