Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18a01
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0480 + 29639124-29639412,29639476-29639552,29639639-296397... 131 2e-35
10_08_0225 - 15995436-15995555,15995655-15995735,15995813-159959... 111 5e-25
11_06_0700 - 26404490-26404747,26405081-26405154,26405420-264054... 29 3.4
04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302 28 4.5
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 28 4.5
08_01_0895 - 8806113-8806220,8806642-8806712,8806969-8807155,880... 28 6.0
03_06_0095 - 31612293-31612607,31612982-31613119,31613229-316133... 27 7.9
>01_06_0480 +
29639124-29639412,29639476-29639552,29639639-29639749,
29639944-29640012,29640650-29640706,29640814-29640852,
29640957-29641061,29641158-29641240,29641333-29641414,
29641760-29641903,29641987-29642067,29642166-29642294
Length = 421
Score = 131 bits (317), Expect(2) = 2e-35
Identities = 62/105 (59%), Positives = 79/105 (75%)
Frame = +2
Query: 251 EQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVP 430
++YL+E WP+V+ L E + EL+L+EGS+TV TTRKT DPYIIIKA + +KLLSRSVP
Sbjct: 97 KKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVP 156
Query: 431 FEQASRVLDDEXGCDIIKINSFVRKKETFLKRRQRLIGPQGVTLK 565
QA ++L+DE C IIKI S +R KE F+KRR RL+GP TLK
Sbjct: 157 APQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLK 201
Score = 35.5 bits (78), Expect(2) = 2e-35
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 167 KIPKFTPDDNPHGLLEESKFATLFPKYR 250
KI +F P N G+LE + F+TLFP+YR
Sbjct: 41 KIEEFDPSWNEGGMLEVTSFSTLFPQYR 68
>10_08_0225 -
15995436-15995555,15995655-15995735,15995813-15995956,
15996305-15996386,15996479-15996561,15996655-15996759,
15996869-15996907,15997004-15997060,15997701-15997769,
15997959-15998069,15998382-15998564
Length = 357
Score = 111 bits (266), Expect = 5e-25
Identities = 51/79 (64%), Positives = 64/79 (81%)
Frame = +2
Query: 329 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEXGCDIIKINSFVRKK 508
+EGS+TV TTRKT DPYII+KA++ +KLLSRSVP QA ++L+DE CDIIKI S +R K
Sbjct: 62 VEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNK 121
Query: 509 ETFLKRRQRLIGPQGVTLK 565
E F+KRR+RL+GP TLK
Sbjct: 122 ERFVKRRERLLGPNLSTLK 140
>11_06_0700 -
26404490-26404747,26405081-26405154,26405420-26405476,
26406072-26406135
Length = 150
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 240 GNNVANLLSSKRPCGLSSGVNLGIFIAQALSTELVSSTSILVFIKFSV-ASKEMIFLLKR 64
G N S K L V L IF++ T+L ++ +LV +K + KE IF++ +
Sbjct: 43 GKNTVGTESLKVEFSLDCTVTLVIFLSTLNPTKLQATEMLLVLLKKEIKGDKEQIFVISK 102
>04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302
Length = 164
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +2
Query: 59 LNLFNKKIISLLATLNLIKTNM-EVEETNSVDNAWAMKI-PKFTPDD--NPHGLLEES 220
L+L ++KI+ L ++LNL++ + +++TN+ ++ K FT D P LL ES
Sbjct: 105 LSLLHRKIVKLDSSLNLLEAKLRSIDDTNAFGHSTNQKAHGLFTQDGRFEPTNLLGES 162
>03_05_1149 + 30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 431 FEQASRVLDDEXGCDIIKI-NSFVRKKETFLKRRQRLI 541
F Q VL+D+ GCD+I++ N V+ ++ + +L+
Sbjct: 1071 FRQEMHVLEDQVGCDLIQVDNRAVQSLLPYMSKFMKLL 1108
>08_01_0895 -
8806113-8806220,8806642-8806712,8806969-8807155,
8807473-8807603,8807679-8807811,8808124-8808242,
8808751-8809039,8809150-8809272,8809300-8809323,
8810016-8810072,8810148-8810255
Length = 449
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 441 ACSNGTLLDNSFMKSRALIIMYGSQVFLVVFTVKLPS 331
A GTLL + M++R I YG + ++ T++L S
Sbjct: 294 AALEGTLLFDELMQARQAIYCYGIVILILQITIQLVS 330
>03_06_0095 -
31612293-31612607,31612982-31613119,31613229-31613315,
31613410-31613469,31613563-31613662,31613757-31614163,
31614335-31614805,31614910-31615032,31615396-31615479,
31615609-31615678,31615767-31615846
Length = 644
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 74 KKIISLLATLNLIKTNMEVEETNSVDNAWAMKIPKFTPDDN 196
K++I +ATL L NME A+ ++P F+P D+
Sbjct: 122 KELIREIATLELEVKNMEQYLLTLYRKAFEQQVPTFSPPDH 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,424
Number of Sequences: 37544
Number of extensions: 194885
Number of successful extensions: 464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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