Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18a01
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...   194   4e-50
U37429-13|AAA79343.1|  303|Caenorhabditis elegans Hypothetical p...    27   7.1  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    27   7.1  
AL132876-7|CAD21659.1|  449|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score =  194 bits (473), Expect = 4e-50
 Identities = 89/139 (64%), Positives = 113/139 (81%)
 Frame = +2

Query: 149 DNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDL 328
           D  W   I  F+ +DNP+GLL+ES F++LFPKYRE+Y+KE WPL++K L EH + A+LDL
Sbjct: 41  DAEW-WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDL 99

Query: 329 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEXGCDIIKINSFVRKK 508
           +EG++ V+TTRKTWDPYII+KAR+ +KLLSRSVP+EQA RVL+DE  C+IIKI+S VR K
Sbjct: 100 LEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNK 159

Query: 509 ETFLKRRQRLIGPQGVTLK 565
           E F+KRR RLIG  G TLK
Sbjct: 160 ERFVKRRARLIGNDGATLK 178


>U37429-13|AAA79343.1|  303|Caenorhabditis elegans Hypothetical
           protein F09E5.3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 2   SCXSVTIKSIVPNSK*ISLLNLFNKKIISLLATLNLIKTNMEVEETNS 145
           +C S  +K+I+   +  +L N++     S+LA  + IKT+   E  N+
Sbjct: 183 ACGSAHLKTILATGELKTLSNVYRASWASILAGSDFIKTSTGKESVNA 230


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
            protein 2, isoformc protein.
          Length = 936

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +2

Query: 104  NLIKTNME-VEETNSVDNAWAMKIPKFTPDDNPHGL-LEESKFATLFPKYREQYLKEC 271
            N IK  ++  ++T++ D+ +  ++PK TP D    + L++++F   F     +Y++EC
Sbjct: 880  NKIKVLLKSADDTSNFDSEFTHEVPKLTPIDRLFLMNLDQTEFEG-FSFVNPEYVQEC 936


>AL132876-7|CAD21659.1|  449|Caenorhabditis elegans Hypothetical
           protein Y105E8A.8 protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
 Frame = +2

Query: 80  IISLLATLNLIKTNMEVEETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQY 259
           I SLL++L       +++E ++ + A + +IP+  P++ P    E+ K          Q 
Sbjct: 26  IASLLSSLRSDHLASKIDELSTTEAAASEEIPEEIPENRPLNRKEKRKL---------QR 76

Query: 260 LKECWPLVQKILSEHHIVAELDL-IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFE 436
           ++E    V+K   E   +AE+   ++ +   K T  +++     K+ +    +  S+  E
Sbjct: 77  MQEIDQEVKKKAQEPVEIAEIPTNLKNTFCDKATFNSYNAQFGYKSTENNNFVHFSIQNE 136

Query: 437 QASRVL 454
           Q +R L
Sbjct: 137 QGNRAL 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,425,087
Number of Sequences: 27780
Number of extensions: 186548
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)