Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17p22
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    66   2e-13
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   4.1  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.2  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.2  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   9.6  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 66.5 bits (155), Expect = 2e-13
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +1

Query: 295 SAAARDPRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPP 420
           + A RDPR+N GPVLFPP P  +   +SGV+VGASGYGFVPP
Sbjct: 36  AVAMRDPRSNRGPVLFPPGPPPNNEDSSGVIVGASGYGFVPP 77


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 414 HEPISGSTDHHSACLRGVTGRRGGKQHRTRIRPRISG 304
           H+PI+ +     A  +G+  + GG+Q   R+   I+G
Sbjct: 49  HKPITLTIPVPQAANKGMINQYGGEQPTLRLLCSIAG 85


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 349 SPAGDPSQTSGVVVGASGYGFV 414
           S + DP   +G+V+G +  G +
Sbjct: 125 SESTDPGLVAGIVIGVTSLGLL 146


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 349 SPAGDPSQTSGVVVGASGYGFV 414
           S + DP   +G+V+G +  G +
Sbjct: 96  SESTDPGLVAGIVIGVTSLGLL 117


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 367 SQTSGVVVGASGYGFVPPGSQGKAYG 444
           S   GVV GASG   V   + G   G
Sbjct: 25  SSAGGVVTGASGGSIVVGANNGGGGG 50


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 367 SQTSGVVVGASGYGFVPP 420
           S +SG++   S YG+V P
Sbjct: 313 SGSSGILTPVSPYGYVKP 330


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 344 PPRRPVTPRRQAE 382
           PP RP   RR+AE
Sbjct: 25  PPTRPTRLRREAE 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,982
Number of Sequences: 438
Number of extensions: 4004
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)