Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17p21
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 277 FCLGMCSIEKGRLVYIVYK 221
           FC+G+CS ++ RLV  +++
Sbjct: 18  FCVGLCSEDEERLVRDLFR 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 566 VDHDLHRHPHQPRT 525
           + H  H HPH P T
Sbjct: 459 IGHTPHHHPHPPET 472


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 244 RLVYIVYKRIGTKFMKKYFV 185
           R  Y+ YK  G  FM  YF+
Sbjct: 44  RFPYLCYKNGGGAFMVPYFI 63


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 244 RLVYIVYKRIGTKFMKKYFV 185
           R  Y+ YK  G  FM  YF+
Sbjct: 97  RFPYLCYKNGGGAFMVPYFI 116


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -2

Query: 572 RNVDHDLHRHPHQPRTHQVRFFPQSADKHDGCQEQRDAMCQNDSCQNAIRQ 420
           ++V+ D  + PHQ   H     PQ+  +    Q+Q+    Q    Q   +Q
Sbjct: 800 KSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQ 850


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +3

Query: 444 VILTHCVTLFLTAIMLVGTLREK 512
           +++  C+TLF   ++++  +RE+
Sbjct: 193 LVIVPCLTLFGNVLVILAVVRER 215


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 546 TSTPAKDASSEVFPSKCRQ 490
           TS PA+  SS+   S+C Q
Sbjct: 676 TSPPARSPSSQAQASQCPQ 694


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 449 FDTLRHAVPDSHHACRH 499
           +  LR   P++HH  RH
Sbjct: 70  YPLLRFENPETHHPIRH 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,427
Number of Sequences: 438
Number of extensions: 3596
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)