Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17p14
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    86   3e-18
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    26   3.7  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    26   3.7  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   6.5  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   8.6  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
 Frame = +3

Query: 87  EEIVERFKLLGLNEQKAKETLKNANVTKVLLAALDEVQLQSLPLGA--GILIYHLATKIK 260
           EE+  +F  +GLNE   K+TLKN  ++  L   ++E  + S       G L++ LA    
Sbjct: 6   EELRAKFTKIGLNETTVKDTLKNKKLSSSLNKVIEETNVGSSGCDRTIGNLLFTLANASL 65

Query: 261 PQTMSKLN----FICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEKACGVGVIV 428
            Q   K N    FI   I SG L + L+V+AA+ Y     ++  ++  EF+K  GVGV++
Sbjct: 66  KQKDPKSNAHEAFIASKIVSGDLKTNLQVNAAITYCK---DKDTIDESEFDKETGVGVVL 122

Query: 429 TPEQVEQAVEKHMVKYKQELLEKRYR-FNSGIIMQAVRADLTWADGKAIKK 578
           TPEQ+EQ V  ++ + K ++LE+RY+  N         A L WA    +K+
Sbjct: 123 TPEQIEQLVGDYVAENKSKILEQRYQLLNPSASALRQHALLKWAPQLEVKQ 173


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 9   YLSQFANIVIYKLK*NPIKIGII-MTPEEIVERFKLLGLNEQKAKETLKNANVTKVLLAA 185
           YL+  A +VIY L  NP+ + +I +    +    KL G + Q +   + N N+  +L   
Sbjct: 65  YLAIIAMLVIYALIRNPLLLIVIGIGVGGVYGIRKLQGADLQLSHRVISNQNLYVILACV 124

Query: 186 LDEVQLQSLPL 218
           L  + L + P+
Sbjct: 125 LIPLGLFASPI 135


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 384 NIEEFEKACGVGVIVTPEQVEQAVEKHMVKYKQELL 491
           NI+    AC    +  P  V  +V K+ +++KQ L+
Sbjct: 54  NIDSKYVACNSRSVTPPNDVASSVSKNTLRHKQRLM 89


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 78  MTPEEIVERFKLLGLNEQKAKETLKNANVTKVLLAALDEVQLQSLPLGAGI 230
           +T  E+ ER K  GLN+ K ++T          +  +  V   +  L AG+
Sbjct: 174 LTESEVEERKKKYGLNQMKEEKTNNIKKFLSFFVGPIQFVMELAAALAAGL 224


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 165 TKVLLAALD-EVQLQSLPLGAGILIYHLATKIKPQTMSKLNFICQYIASG 311
           +++ + ++D +++LQ   L    L YHL T+      ++LN++ +YI  G
Sbjct: 71  SRLKITSVDRKIRLQIHQLHLLCLTYHLCTRNTWCDDNRLNYLVKYIPPG 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,979
Number of Sequences: 5004
Number of extensions: 46800
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)