Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17p14
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 93 2e-19
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451... 54 1e-07
03_06_0451 + 34025048-34027099,34028210-34028242 29 2.9
09_04_0126 + 14874739-14875581 29 3.8
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 29 3.8
02_05_0616 - 30380558-30380822,30380914-30381045,30381138-303812... 29 3.8
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 5.1
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 93.1 bits (221), Expect = 2e-19
Identities = 51/166 (30%), Positives = 87/166 (52%)
Frame = +3
Query: 81 TPEEIVERFKLLGLNEQKAKETLKNANVTKVLLAALDEVQLQSLPLGAGILIYHLATKIK 260
+P E+ F +GL+++ A+ L N VT L A + E + G L+Y +ATK
Sbjct: 12 SPPELAS-FLAIGLDQRTAENALANRKVTANLTAVIAEAGVSGCDKSVGNLLYTVATKYP 70
Query: 261 PQTMSKLNFICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEKACGVGVIVTPEQ 440
+ + QYI S K+ + ++DAAL + L + ++ +FE+ CGVGV+V+ E+
Sbjct: 71 ANALVHRPVVIQYIVSSKIKTPAQLDAALSF-LSTLGPDPLDTAKFEETCGVGVVVSTEE 129
Query: 441 VEQAVEKHMVKYKQELLEKRYRFNSGIIMQAVRADLTWADGKAIKK 578
++ V + + + ++E+RY N G + VR W D K IK+
Sbjct: 130 IQSMVTDILKENMEAIVEQRYHINVGSLCGQVRKWHPWGDAKFIKE 175
>01_01_0608 -
4513604-4513701,4513790-4513919,4514027-4514116,
4514225-4514330,4514442-4514542,4514678-4514773,
4514860-4514959,4515133-4515269,4515563-4515661,
4515740-4515937,4516058-4516235,4516635-4516690,
4516781-4516933,4517248-4517340,4517422-4517523,
4517609-4517650,4517812-4517855,4518087-4518186,
4518323-4518394,4518499-4518621,4519309-4519452
Length = 753
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/79 (34%), Positives = 47/79 (59%)
Frame = +3
Query: 225 GILIYHLATKIKPQTMSKLNFICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEK 404
G L+Y +ATK + + YI S K+ + ++DAAL +L N +++ +FE+
Sbjct: 84 GNLLYTVATKYPTNALVHRPVLIDYIVSTKIKNPAQLDAALSFLT-NTGPDSLDTGKFEE 142
Query: 405 ACGVGVIVTPEQVEQAVEK 461
ACGVGV+V+ E+++ V +
Sbjct: 143 ACGVGVVVSIEEIKSTVNE 161
>03_06_0451 + 34025048-34027099,34028210-34028242
Length = 694
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 240 GKSKCLHQVEATAIAPHLTPQAILW 166
G+S CL + EA ++ LTP ++W
Sbjct: 488 GRSGCLDEAEALILSMPLTPDGVIW 512
>09_04_0126 + 14874739-14875581
Length = 280
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 461 FFYCLLYLFGCYNNTNTTGFFKFLNIYISFINIAKKVVQCC 339
F Y L L G Y TGFF + IY + K +++ C
Sbjct: 170 FGYLLKLLTGTYLPDTITGFFDLIRIYFPVVYDIKHLMRFC 210
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 589 HPLHFFIALPSAQVRSALTACMIIPELNLYLFSNSSCLYFTIC 461
HP+ + P +RS + A I P++ + ++ CLY C
Sbjct: 242 HPIQVMVTSPLPLIRSPVAALFIGPDVLIVATVDAVCLYIWHC 284
>02_05_0616 -
30380558-30380822,30380914-30381045,30381138-30381279,
30381377-30381569,30381657-30381890,30381992-30382189
Length = 387
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +3
Query: 63 KIGIIMTPEEIVERFKLLGLNE--QKAKETLKNANVTKVLLAALDEVQLQSLPLGAGILI 236
K G+ P + + L E K K ++NA + +AAL L+ + G+ ++I
Sbjct: 238 KTGVPQLPSNAKNKLISIPLEELPSKTKSMVRNAKQAEAEIAALKISYLKRIGKGSNVII 297
Query: 237 ---YHLATKIKPQTMSKLNF-ICQYIASG 311
Y ++KI +T++ + F C +A G
Sbjct: 298 MDSYCDSSKIVAKTLNSVGFKNCWVMAGG 326
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 460 FSTACSTCSGVTITPTPQAFSNSSIFTL 377
FS+ CS+ G + TPQAF+ +S TL
Sbjct: 1514 FSSVCSSPGGSSQKATPQAFAFASTITL 1541
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,345,751
Number of Sequences: 37544
Number of extensions: 264962
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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