Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17p14
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical pr...   110   7e-25
U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    29   2.6  
U40941-9|AAX55692.1|  294|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z95559-3|CAB08998.1|  786|Caenorhabditis elegans Hypothetical
           protein Y41E3.4 protein.
          Length = 786

 Score =  110 bits (265), Expect = 7e-25
 Identities = 60/172 (34%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
 Frame = +3

Query: 99  ERFKLLGLNEQKAKETLKNANVTKVLLAALDEVQLQSLPLGA--GILIYHLATKIKPQTM 272
           E    LGL++ K  ETLKN  +T+ +  ++ ++  +S  +    G L+Y LATK+KPQ  
Sbjct: 5   EELLSLGLSDSKVAETLKNVKLTETI-GSIVKLASESGEISKQKGTLLYQLATKLKPQVA 63

Query: 273 SKLNFICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEKACGVGVIVTPEQVEQA 452
           +    + +YI +  + +  ++ AA++YLL +  +  + + +FEK+CGVGV+VT + +E A
Sbjct: 64  AHTPLVVKYIMNDGIKTEPQLSAAIEYLLSHTVKG-IQVPDFEKSCGVGVVVTIDDIEAA 122

Query: 453 VEKHMVKYKQELLEKRYRFNSGIIMQAVRADLTWADGKAIKK*SGCTDLRFI 608
           V K + +++++++ +RY F +G ++  +RA L WADG   KK     DLRF+
Sbjct: 123 VTKVIGQHREKIVAERYSFPAGKLLGELRALLPWADGAITKK---EVDLRFL 171


>U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical
           protein C07G1.2 protein.
          Length = 635

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 610 PINRRSVHPLHFFIALPSA--QVRSALTACMIIPELNLYLFSNSSCLYFTICFSTACSTC 437
           P+   ++HP +     PS+  Q+R    +  + P L  +   N SCL    C ST  STC
Sbjct: 490 PLQPTTLHPTNPSFDSPSSVSQMRRTSPSATLAPRLPAW---NLSCLREPNCTSTVISTC 546

Query: 436 SGVTITPTPQA 404
             +  +   QA
Sbjct: 547 EPIRCSHCQQA 557


>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 90  EIVERFKLLGLNEQKAKETLKNANVTKVLLAALDEVQLQSLPLG 221
           E+V+ F  +  N    K  LKN  +T  ++  L E  L+SL LG
Sbjct: 49  EVVKFFPKISKNFFLTKVNLKNVRLTHPMIKLLSEHTLESLALG 92


>U40941-9|AAX55692.1|  294|Caenorhabditis elegans Hypothetical
           protein F35C8.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 179 CGVR*GAIAVASTWCRHFDLPSSYQNQTSNYEQVKLYLPIYCIRKTGFNVASRR 340
           CG+   +IAV+ T C+ +  P       SN     +   I+ +  T F +A+ R
Sbjct: 208 CGILENSIAVSDTGCQQYTAPEILVKGVSNSPGYSIKSDIWSLGITIFELATLR 261


>Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 255 IKPQTMSKLNFICQYIASGKLDSTLRVD---AALDYL--LGNINEANVNIEEFEKACGVG 419
           +KP+ +  L  ICQ + S    +TL  D    AL+ L  L     A  +I  F +     
Sbjct: 112 VKPKVLENLEKICQNLTSILNSATLEADQLSTALEALTSLSTSFNATSDIWMFHEYTSTI 171

Query: 420 VIVTP-EQVEQAVEKHMVKYKQEL 488
             V P  +  + VE+H+ KYK  L
Sbjct: 172 QAVAPFLKTARGVEEHL-KYKDNL 194


>AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +3

Query: 255 IKPQTMSKLNFICQYIASGKLDSTLRVD---AALDYL--LGNINEANVNIEEFEKACGVG 419
           +KP+ +  L  ICQ + S    +TL  D    AL+ L  L     A  +I  F +     
Sbjct: 112 VKPKVLENLEKICQNLTSILNSATLEADQLSTALEALTSLSTSFNATSDIWMFHEYTSTI 171

Query: 420 VIVTP-EQVEQAVEKHMVKYKQEL 488
             V P  +  + VE+H+ KYK  L
Sbjct: 172 QAVAPFLKTARGVEEHL-KYKDNL 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,235
Number of Sequences: 27780
Number of extensions: 260315
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)