Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17p09
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    39   3e-04
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    24   6.7  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 157 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 336
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 337 F 339
           F
Sbjct: 129 F 129


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 278 GLLSSS-NKYNNRNDGKAMKINVKAGIIVQINSIIC 174
           G LS   NK +N+N  KA  +  K G+   I  I C
Sbjct: 91  GFLSQQENKSSNQNPSKANNLFDKLGVSKPITFIAC 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 824,886
Number of Sequences: 5004
Number of extensions: 8972
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)