Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17p03
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 575 IWXYIALNFEETNHI 531
           +W +I L + +TNHI
Sbjct: 58  LWRWIRLTYGQTNHI 72


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 575 IWXYIALNFEETNHI 531
           +W +I L + +TNHI
Sbjct: 96  LWRWIRLTYGQTNHI 110


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 417 NNRSKGTECSNSNRVDTRYCNPFFRNDQWLFIGTMAVE 304
           + RS G+   +  RV  R CN     D  LF+ T A E
Sbjct: 376 DKRSMGSH--HGQRVMVRTCNGLELRDPSLFVETSASE 411


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 248 WWWRVGISGL 219
           WWW + IS L
Sbjct: 366 WWWNMKISNL 375


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 450 HHHHPSPNQPAVIINQPPPPYR*IYTEYVIS 542
           HHHH        +  + PP     Y+ YV S
Sbjct: 352 HHHHHQTQSLQHLHYRQPPTLSESYSSYVNS 382


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 45 FDCGDCDLCVNPCCLAL 95
          F  G C+  +NPC  AL
Sbjct: 48 FWLGYCNSAINPCIYAL 64


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 45  FDCGDCDLCVNPCCLAL 95
           F  G C+  +NPC  AL
Sbjct: 496 FWLGYCNSAINPCIYAL 512


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = +2

Query: 443 RDTPSPPFTESTSRYHQPTTTSIQIDIY 526
           R+ P PP        H P  T ++  ++
Sbjct: 329 RENPGPPGVPGDHGDHAPKQTEVRFKVH 356


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = +2

Query: 443 RDTPSPPFTESTSRYHQPTTTSIQIDIY 526
           R+ P PP        H P  T ++  ++
Sbjct: 329 RENPGPPGVPGDHGDHAPKQTEVRFKVH 356


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = -1

Query: 572 WXYIALNFEETNH 534
           W Y+++ +EE+N+
Sbjct: 280 WSYVSIIYEESNY 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,132
Number of Sequences: 438
Number of extensions: 2863
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)