Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17p01
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    34   6e-04
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   2.7  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   4.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 34.3 bits (75), Expect = 6e-04
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
 Frame = +2

Query: 32  VALVVGAASNLGYQVLKKLTETHKGKIYFTTEDDTAGFNILKSLERPDIEISYLQMDITY 211
           VALV GA S +G  +++ L       I    + D     +++ L+    ++  LQ D++ 
Sbjct: 9   VALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMK-TLVEELKSKPGKLVPLQCDLSN 67

Query: 212 TKSIIRLRHYIQDLDERIDLLINITDYVAEKNLSNFEKI--RRTLSVNFYGYINFGKLVY 385
              I+++  +++     ID+LIN      +  L N E +  ++   +N  G     + V 
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVL 127

Query: 386 PLLNE----NARVVNVSGPAGL 439
            L+ +    N  +VN++  +GL
Sbjct: 128 KLMKKKGINNGIIVNINDASGL 149


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 102 KEKSTSLQKMTQPASTFSRAWRGPTSKSAT 191
           +EK+ SL  +  P     R W G T ++ T
Sbjct: 457 REKNVSLLHLIFPPDIAKRLWLGETIEAKT 486


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 53  ASNLGYQVLKKLTETHKGKIY 115
           A++L  + +KK  ET+K  IY
Sbjct: 55  AAHLNAEGMKKYCETYKNSIY 75


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 56  SNLGYQVLKKLTETHKGKIYFTTEDD 133
           SN+ +  LKKL ++ + +I    E++
Sbjct: 38  SNMTFHELKKLRDSSEARIKLINEEE 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,676
Number of Sequences: 438
Number of extensions: 2143
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)