Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17o19
         (325 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   0.70 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   3.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +2

Query: 116 WVEYXQLAAEYKPAVNLGQGFPDYHAPKHVTEALSXIATXENPLLHQ 256
           W E  + A+  +P+ ++ Q +P+   P+   +A+  +   E     Q
Sbjct: 22  WEEIRRQASVEQPSFSVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQ 68


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 116 IRFSHQLHNVXAIETFXPXYDK 51
           I   H   N  A+ETF   Y K
Sbjct: 179 IHLFHDASNFIAMETFPSVYSK 200


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 175 LS*LSRTETCNRSTIXDSYQXKSTASSVHXRLWS 276
           LS   R E   R+   D YQ K+    V    WS
Sbjct: 248 LSNKQRFEYFTRTIPSDHYQVKAMVEIVMKMKWS 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,242
Number of Sequences: 438
Number of extensions: 1264
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)