Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17o08
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    26   3.2  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   3.2  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   5.6  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.7  

>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 398 GDYNSLAIVRITRTACTAVDIGRTYQSLLYS 490
           G Y S+  ++IT T   +++IG TY+  L++
Sbjct: 169 GYYGSIRSLQITATRYKSLEIGCTYEEYLHN 199


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 512 GTIYPNLCCTTKTGKSC 462
           GT+YP +  TTKT  +C
Sbjct: 272 GTVYPGVTFTTKTSPAC 288


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 128 IFKKYLNFKH*VLPQVPYIPTYQVY*VYNLCLHTTYIAC 12
           IFK +L++   + P + ++P Y  Y + N  +    + C
Sbjct: 95  IFKNFLHYLKSLFPIIEWLPNYNPYWLINDLIAGITVGC 133


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 120 FEYKKKKESVVFIF*IQCLK 179
           F+Y KK   +VFIF ++ LK
Sbjct: 24  FKYSKKNTRLVFIFIVKMLK 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,848
Number of Sequences: 5004
Number of extensions: 36023
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)