Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17o08
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77660-5|CAB01173.1|  284|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z77660-5|CAB01173.1|  284|Caenorhabditis elegans Hypothetical
           protein F38H4.5 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 493 FAVQQRLVSPAYVHSSTC-CPRDSD 422
           + V  RLV P + H  TC CP D D
Sbjct: 172 YVVAARLVDPRFYHVDTCFCPLDED 196


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical protein
            F37D6.1 protein.
          Length = 1227

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 548  FDELVSSLLNTRGTIYPNLCCTTKTGKSCLCPQQYMLSS*F*RWL 414
            F++ V+ L+ +     P + C+   GK CL P     S+   RWL
Sbjct: 1022 FNKDVTHLIASNMQRAPKVLCSIAAGKWCLTPDYVTKSAEVGRWL 1066


>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 332 IKYGFYGGVAVGGCVTALKFHDGDYNSLAIVRITRTACTAVDIGRTY 472
           I +G  GG+ +G  +      D  +   A + +  T C AV IG TY
Sbjct: 257 IVFGCIGGIVLGWILWRFPRSDAPHTQFARITLLGTICIAVVIG-TY 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,436
Number of Sequences: 27780
Number of extensions: 194710
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)