Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17n18
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 262 PVNTYLSIFIYTSGRPVVEFQLSRISKLLFVANAISKFRSLSNS 131
           P +T   ++IY +  P  + +  R+SK    +N I    SLS+S
Sbjct: 315 PESTGNLVYIYNN--PFSDVEERRVSKTAMNSNQIVSDNSLSSS 356


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 339 YTIAVSNVQETSRHDQQTSGNNSPGASVCSDSELPYISYTVDR 467
           Y ++V+  + + RH   T   +   +S  SDS    I  ++DR
Sbjct: 21  YVVSVAGYKHSRRHRDFTVAESYDASSSNSDSLSMTIPPSIDR 63


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 368 FLYIGDSNSIASPY*WHSLGLPFR 297
           FL++G  NS+ +P  + +L   FR
Sbjct: 412 FLWLGYCNSLLNPIIYATLNRDFR 435


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 399 NNSPGASVCSDSELPYISYTVDRPIGDSPKAASKSQR 509
           NN P  + CSD + P    T  +    S  A S+S +
Sbjct: 873 NNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSK 909


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 301  LGGTDDCSEPIMCPVNTYLSIFIY 230
            LGG  + S   + P NT L  F+Y
Sbjct: 1719 LGGAAEASAAGLHPNNTLLHSFMY 1742


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 301  LGGTDDCSEPIMCPVNTYLSIFIY 230
            LGG  + S   + P NT L  F+Y
Sbjct: 1715 LGGAAEASAAGLHPNNTLLHSFMY 1738


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,342
Number of Sequences: 438
Number of extensions: 2478
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)