Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17n11
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.53 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   3.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 415  NTSRTSLEASIPDDRRPMT 471
            N  R+SLE  IP D+R MT
Sbjct: 1286 NLIRSSLETGIPRDQRAMT 1304


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 376 TPNDIRYIDDISPNTSRTSLEASIP 450
           T  DIRY  +  PN+   S E S+P
Sbjct: 162 TMRDIRYKWNEGPNSVGVSNEVSLP 186


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 484 ISEPKNGEEAKADGLSGDSPV 546
           + +P    E   D  SGDSPV
Sbjct: 56  VPQPPRSLEGSYDSSSGDSPV 76


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 376 TPNDIRYIDDISPNTSRTSLEASIP 450
           T  DIRY  +  PN+   S E S+P
Sbjct: 101 TMRDIRYKWNEGPNSVGVSNEVSLP 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,418
Number of Sequences: 438
Number of extensions: 3167
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)