Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17m24
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    28   0.64 
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   1.5  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   5.9  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   7.8  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 284 NIINEVFQKKEVEQKRFLP-SIKNYKVLGETRPSSFGPATYQDFKD 418
           NI+  V  K ++EQK  LP ++KN  + G+   SS   A ++++ D
Sbjct: 204 NIVGRVADKLQLEQKSVLPNAVKN--IDGQDDDSSEQTAAFEEYDD 247


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 213 RARENSCLIKEARLY*IMVLKPSGTSLMRCSRRKRLNRKGFCPVSRII 356
           R  + +C     R+Y +M   P+G   +R +  + + R GF  V++I+
Sbjct: 302 RMLDQNCSEDIIRMYRLMSRTPNGLQPLRQTFEEFVKRSGFAAVAKIV 349


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 350 NYKVLGETRPSSFGPATYQDFK 415
           NY V  +TRPS  GP +   F+
Sbjct: 139 NYNVNPDTRPSKIGPPSTSHFQ 160


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 284 NIINEVFQKKEVEQKR----FLPSIKNYKVLGETRPSSFGPATYQ 406
           ++I  +F   E+E +      LP +KN     +   SSF P  Y+
Sbjct: 319 SLIGYLFDGSEIEDEEVRSYILPPLKNTLRFSDMESSSFAPMIYE 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,003
Number of Sequences: 5004
Number of extensions: 40776
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)