Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17m12
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.71 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.2  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   2.9  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   2.9  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   2.9  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   2.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   3.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 157 ILSNTTCCTFDNRHNNQ 107
           ++ NT C   DN++NNQ
Sbjct: 577 LIMNTRCANSDNQNNNQ 593


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 157 ILSNTTCCTFDNRHNN 110
           ++ N+ C  FDN+ NN
Sbjct: 408 LIRNSRCANFDNQDNN 423


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 451 PIVTRTMSGSIRYCNRCVLVKPD 519
           P  TR ++ +I+Y N   +V+PD
Sbjct: 247 PFFTRVVTDTIKYRNDNNIVRPD 269


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 180 HSVYNNLVILCLRYSTLYFYNTKHSPTMDLFGAVPHTPN 296
           H++  +   LC R+   YF+       +D    +P  PN
Sbjct: 287 HAILGHSGFLCERHQKRYFFGRDSVDHVDFDEFLPPPPN 325


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 363 LVFFRDWFYLCKNCFPVRPDE 301
           ++F   WF  C + FP   DE
Sbjct: 6   VLFIAAWFIACTHSFPGAHDE 26


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 513 LDEHAPVAVAYRSRHCPCNNWQILSKVFKNC 421
           LD++A V V    RH P +      K+F  C
Sbjct: 69  LDKNAEVDVQKALRHLPRSMQDSTKKLFNKC 99


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 363 LVFFRDWFYLCKNCFPVRPDE 301
           ++F   WF  C + FP   DE
Sbjct: 6   VLFIAAWFIACTHSFPGAHDE 26


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 363 LVFFRDWFYLCKNCFPVRPDE 301
           ++F   WF  C + FP   DE
Sbjct: 6   VLFIAAWFIACTHSFPGAHDE 26


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 157 ILSNTTCCTFDNRHNNQ 107
           ++ NT C   +N++NNQ
Sbjct: 411 LIKNTRCAKSNNQNNNQ 427


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 130 FDNRHNNQVMKSYYSVL 80
           ++N +NN   K YY+++
Sbjct: 343 YNNNYNNNCKKLYYNII 359


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 395 VQNLKIHKEQFLKT--LLRICQLL 460
           +QN K+  EQFL T   L  C+++
Sbjct: 553 LQNPKVSNEQFLNTAATLSFCEMI 576


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 404 LKIHKEQFLKTLLRI 448
           LKI  E+FL T+LR+
Sbjct: 26  LKIWTEEFLSTILRL 40


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 346 IPEK-YKLPEAELEKMLSAESEDSQRTILENFAKDLP 453
           +P K Y LP+   E+ L +      R  LE  + DLP
Sbjct: 244 LPSKEYDLPDYRGEEYLYSHKLLLNRYYLERLSNDLP 280


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 346 IPEK-YKLPEAELEKMLSAESEDSQRTILENFAKDLP 453
           +P K Y LP+   E+ L +      R  LE  + DLP
Sbjct: 244 LPSKEYDLPDYRGEEYLYSHKLLLNRYYLERLSNDLP 280


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 203 HTMPTLFNSVFLQY 244
           H MP L   +FL+Y
Sbjct: 328 HRMPQLIRKIFLKY 341


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 130 FDNRHNNQVMKSYYSV 83
           ++N +NN   K YY++
Sbjct: 340 YNNNYNNNYKKLYYNI 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,820
Number of Sequences: 438
Number of extensions: 3932
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)