Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17m04
(637 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 1.9
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 1.9
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 22 4.3
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 4.3
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 4.3
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 4.3
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 4.3
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 4.3
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 4.3
AF388659-3|AAK71993.1| 548|Apis mellifera 1D-myo-inositol-trisp... 22 4.3
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 22 4.3
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 22 4.3
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 5.7
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 5.7
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 5.7
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 5.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 5.7
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 5.7
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 5.7
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 5.7
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 5.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.6
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 1.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 428 HVGNRRKDCCTHWCS 472
H+ R+K+CC W S
Sbjct: 392 HMQPRKKNCCRSWLS 406
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.4 bits (48), Expect = 1.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 428 HVGNRRKDCCTHWCS 472
H+ R+K+CC W S
Sbjct: 392 HMQPRKKNCCRSWLS 406
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 22.2 bits (45), Expect = 4.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 354 YHDYDGFVVLH 386
+HDY G VV+H
Sbjct: 196 FHDYTGSVVIH 206
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSC 237
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSC 237
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSC 237
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.2 bits (45), Expect = 4.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSC 237
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.2 bits (45), Expect = 4.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 197 KKYATSSNSLRSRTHGFQHTSSHYSRERSC 226
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.2 bits (45), Expect = 4.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSC 237
>AF388659-3|AAK71993.1| 548|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
Length = 548
Score = 22.2 bits (45), Expect = 4.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 156 LPQLHDDAYWK 188
LP++H DA WK
Sbjct: 510 LPRIHHDAEWK 520
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 22.2 bits (45), Expect = 4.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 156 LPQLHDDAYWK 188
LP++H DA WK
Sbjct: 425 LPRIHHDAEWK 435
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 22.2 bits (45), Expect = 4.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 156 LPQLHDDAYWK 188
LP++H DA WK
Sbjct: 744 LPRIHHDAEWK 754
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 197 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 226
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 197 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 226
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 237
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 237
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 237
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 237
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 237
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 237
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 5.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 485 KYWNLSTSEYNSLSDGFQHERQDRTTVRSC 396
K + S++ S + GFQH + RSC
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSRYSRERSC 237
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 5.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 450 TVVLTGAQVPIFQPRS 497
TV+ TGA V ++QP S
Sbjct: 746 TVIQTGANVNLWQPLS 761
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 99 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLA 200
+ KG+ + +K +S++ + + DD KN+ A
Sbjct: 326 RRAKGMELQEKSSKSLLANVLDIDDDIRHKNSAA 359
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 99 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLA 200
+ KG+ + +K +S++ + + DD KN+ A
Sbjct: 326 RRAKGMELQEKSSKSLLANVLDIDDDIRHKNSAA 359
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 99 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLA 200
+ KG+ + +K +S++ + + DD KN+ A
Sbjct: 326 RRAKGMELQEKSSKSLLANVLDIDDDIRHKNSAA 359
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 99 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLA 200
+ KG+ + +K +S++ + + DD KN+ A
Sbjct: 326 RRAKGMELQEKSSKSLLANVLDIDDDIRHKNSAA 359
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 99 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLA 200
+ KG+ + +K +S++ + + DD KN+ A
Sbjct: 326 RRAKGMELQEKSSKSLLANVLDIDDDIRHKNSAA 359
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 99 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLA 200
+ KG+ + +K +S++ + + DD KN+ A
Sbjct: 326 RRAKGMELQEKSSKSLLANVLDIDDDIRHKNSAA 359
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 99 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLA 200
+ KG+ + +K +S++ + + DD KN+ A
Sbjct: 394 RRAKGMELQEKSSKSLLANVLDIDDDIRHKNSAA 427
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 99 KNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLA 200
+ KG+ + +K +S++ + + DD KN+ A
Sbjct: 394 RRAKGMELQEKSSKSLLANVLDIDDDIRHKNSAA 427
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,375
Number of Sequences: 438
Number of extensions: 4595
Number of successful extensions: 48
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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