Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17l16
         (135 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   1.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   1.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          20   2.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    18   9.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    18   9.5  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -1

Query: 78 IKTLQSNITKFLTKQNNASFRFNAYI 1
          +K  +++ T++ T +    F FN Y+
Sbjct: 8  VKRQRTSYTRYQTLELEKEFHFNRYL 33


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 30  YFVLLKIL*CYFVTF 74
           Y +L  IL CY VTF
Sbjct: 696 YVLLSGILLCYLVTF 710


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 119 VKYIS-LTFINNLASSKRYKVT 57
           V YI  LT +NN    KR+++T
Sbjct: 93  VVYIEHLTKLNNAIEEKRFELT 114


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 48  FLTKQNNASF 19
           FLT+QN A+F
Sbjct: 337 FLTRQNPAAF 346


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 26  ALFCFVKNFVMLLC 67
           A+ CFV   + L C
Sbjct: 420 AIVCFVSYLIGLFC 433


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 26  ALFCFVKNFVMLLC 67
           A+ CFV   + L C
Sbjct: 473 AIVCFVSYLIGLFC 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,589
Number of Sequences: 438
Number of extensions: 354
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 25
effective length of database: 135,393
effective search space used:  2572467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)