Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17l15
(473 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032730-1|AAH32730.1| 334|Homo sapiens dihydrodiol dehydrogena... 101 1e-21
AB021933-1|BAA83490.1| 334|Homo sapiens dimeric dihydrodiol deh... 101 1e-21
BC111750-1|AAI11751.1| 1025|Homo sapiens interferon induced with... 29 6.2
AY017378-1|AAG54076.1| 1025|Homo sapiens RNA helicase-DEAD box p... 29 6.2
AK056293-1|BAB71141.1| 468|Homo sapiens protein ( Homo sapiens ... 29 6.2
AF095844-1|AAG34368.1| 1025|Homo sapiens melanoma differentiatio... 29 6.2
AC007750-3|AAY24206.1| 589|Homo sapiens unknown protein. 29 6.2
>BC032730-1|AAH32730.1| 334|Homo sapiens dihydrodiol dehydrogenase
(dimeric) protein.
Length = 334
Score = 101 bits (243), Expect = 1e-21
Identities = 45/110 (40%), Positives = 66/110 (60%)
Frame = +2
Query: 134 MQLKWGIAGVGMIAHDFLTALDTLPPEQHRVVAIAGKDVDRVQRLATLHKINTAYEGYEQ 313
M L+WGI VG+I+ DF L TLP +H+VVA+A +D+ R + A H I AY YE+
Sbjct: 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEE 60
Query: 314 LARDASIDIVFVSVLNLQHYEITKLMLENDKHVLCEKPMGMTYKQTKSLV 463
LA+D S+++ ++ + QH L L K VLCEKP G+ + + +V
Sbjct: 61 LAKDPSVEVAYIGTQHPQHKAAVMLCLAAGKAVLCEKPTGVNAAEVREMV 110
>AB021933-1|BAA83490.1| 334|Homo sapiens dimeric dihydrodiol
dehydrogenase protein.
Length = 334
Score = 101 bits (243), Expect = 1e-21
Identities = 45/110 (40%), Positives = 66/110 (60%)
Frame = +2
Query: 134 MQLKWGIAGVGMIAHDFLTALDTLPPEQHRVVAIAGKDVDRVQRLATLHKINTAYEGYEQ 313
M L+WGI VG+I+ DF L TLP +H+VVA+A +D+ R + A H I AY YE+
Sbjct: 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEE 60
Query: 314 LARDASIDIVFVSVLNLQHYEITKLMLENDKHVLCEKPMGMTYKQTKSLV 463
LA+D S+++ ++ + QH L L K VLCEKP G+ + + +V
Sbjct: 61 LAKDPSVEVAYIGTQHPQHKAAVMLCLAAGKAVLCEKPTGVNAAEVREMV 110
>BC111750-1|AAI11751.1| 1025|Homo sapiens interferon induced with
helicase C domain 1 protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -1
Query: 404 YRFLALTL*FRSAVNSEHSRKQCL*KHHAPVARNLRTLC*SCAVLLIVERDLHLCRLLQQ 225
Y L L +S + + K+ + KH+ + LC +C+VL D+H+ +
Sbjct: 869 YAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHH 928
Query: 224 PCVVPEVKCLML 189
+ PE K L +
Sbjct: 929 VNMTPEFKELYI 940
>AY017378-1|AAG54076.1| 1025|Homo sapiens RNA helicase-DEAD box
protein RH116 protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -1
Query: 404 YRFLALTL*FRSAVNSEHSRKQCL*KHHAPVARNLRTLC*SCAVLLIVERDLHLCRLLQQ 225
Y L L +S + + K+ + KH+ + LC +C+VL D+H+ +
Sbjct: 869 YAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHH 928
Query: 224 PCVVPEVKCLML 189
+ PE K L +
Sbjct: 929 VNMTPEFKELYI 940
>AK056293-1|BAB71141.1| 468|Homo sapiens protein ( Homo sapiens
cDNA FLJ31731 fis, clone NT2RI2006855, weakly similar to
Homo sapiens RNA helicase (RIG-I) mRNA. ).
Length = 468
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -1
Query: 404 YRFLALTL*FRSAVNSEHSRKQCL*KHHAPVARNLRTLC*SCAVLLIVERDLHLCRLLQQ 225
Y L L +S + + K+ + KH+ + LC +C+VL D+H+ +
Sbjct: 312 YAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHH 371
Query: 224 PCVVPEVKCLML 189
+ PE K L +
Sbjct: 372 VNMTPEFKELYI 383
>AF095844-1|AAG34368.1| 1025|Homo sapiens melanoma differentiation
associated protein-5 protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -1
Query: 404 YRFLALTL*FRSAVNSEHSRKQCL*KHHAPVARNLRTLC*SCAVLLIVERDLHLCRLLQQ 225
Y L L +S + + K+ + KH+ + LC +C+VL D+H+ +
Sbjct: 869 YAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHH 928
Query: 224 PCVVPEVKCLML 189
+ PE K L +
Sbjct: 929 VNMTPEFKELYI 940
>AC007750-3|AAY24206.1| 589|Homo sapiens unknown protein.
Length = 589
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -1
Query: 404 YRFLALTL*FRSAVNSEHSRKQCL*KHHAPVARNLRTLC*SCAVLLIVERDLHLCRLLQQ 225
Y L L +S + + K+ + KH+ + LC +C+VL D+H+ +
Sbjct: 433 YAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHH 492
Query: 224 PCVVPEVKCLML 189
+ PE K L +
Sbjct: 493 VNMTPEFKELYI 504
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,392,542
Number of Sequences: 237096
Number of extensions: 1095724
Number of successful extensions: 2056
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2056
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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