Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17k04
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    81   9e-18
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   6.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   6.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   6.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   6.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 81.0 bits (191), Expect = 9e-18
 Identities = 41/89 (46%), Positives = 56/89 (62%)
 Frame = +2

Query: 329 RPKVLKNHESRELLYDRLYDTTCPRVPTLCNERSCLGSLMAIPGRGDVPRDPEEVLNDAK 508
           +P  L+N   +   +D L+     +  TLC+ + CLGS+M +P  G  PR  EE+L  AK
Sbjct: 13  KPTKLRNLIYKTEAFDSLHAGNAEK--TLCSGQVCLGSVMQLPIHGTEPRSKEEILLHAK 70

Query: 509 DFLGQYFASIRRANTPAHEARWKIVQEEV 595
           DFL QYF+SIRR N+ AH  RW+ VQ+EV
Sbjct: 71  DFLEQYFSSIRRLNSEAHRIRWESVQKEV 99



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 624 QQKLVFGAKLAW 659
           + +LVFGAKLAW
Sbjct: 109 ETELVFGAKLAW 120


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 565 SSLENRTRGSSYDWHIPTNHNRNWY 639
           SSL N  + S+Y+ +   N+N N Y
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 565 SSLENRTRGSSYDWHIPTNHNRNWY 639
           SSL N  + S+Y+ +   N+N N Y
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 565 SSLENRTRGSSYDWHIPTNHNRNWY 639
           SSL N  + S+Y+ +   N+N N Y
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNNNY 107


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 565 SSLENRTRGSSYDWHIPTNHNRNWY 639
           SSL N  + S+Y+ +   N+N N Y
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNNNY 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,277
Number of Sequences: 438
Number of extensions: 3604
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)