Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17k02
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 31 0.15
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 1.0
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 27 1.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.4
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.2
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.2
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 26 4.2
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 25 5.6
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 25 5.6
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 25 5.6
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 7.3
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 25 7.3
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 7.3
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 9.7
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.7 bits (66), Expect = 0.15
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 239 NWGNKEVEELLHXENISSCLIEICKTHDIDGPCLLSFVDRDFHTHPFDQLKLGERKRFIL 418
+W N EEL + ++ IE + +D LS ++F P D++KLGE K +
Sbjct: 15 SWKNSRFEELQREADEAAAEIEKMQKTSLDERKELSSKTKEFRKQP-DEVKLGEMKGLLK 73
Query: 419 L 421
L
Sbjct: 74 L 74
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 197 KLEEYSETMESDILNWGNKEVEELLHXENISSCLIEI 307
KL EYSE + + L N L H IS C +++
Sbjct: 168 KLREYSEKVTASALKESNNVTSNLHHIRIISKCSLKL 204
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.5 bits (58), Expect = 1.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 197 KLEEYSETMESDILNW-GNKEVEELLHXENISSCLIEI-CKTHDIDGPCLLSFVDRDFHT 370
KL+ +E + + K E + E ISS IE+ K +ID L + + ++ H
Sbjct: 352 KLKRRISELEMAVKEYESEKSYSEKEYEEKISSLRIELEDKLAEID--MLRNKLLKEEHK 409
Query: 371 HPFDQLKLGERKRFILLVKKLQRHNRSAMMEL 466
H KL E +++ ++ +R+N +EL
Sbjct: 410 HHSTSEKLEELSKYVASIQDKERNNGQNALEL 441
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 446 RSAMMELGLCDDLINPATNINFLGT--NLSHLS 538
++ + E +C D INP+T+I GT ++ HLS
Sbjct: 191 KNRLYECSVCTDTINPSTSIWSCGTCYHVFHLS 223
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 347 TIAGTVRLYRAFYIFLLNNWKYSLYVIILPLLCYPNLEYRTPSF-HCILLILLVVQKSN 174
T+ +R Y Y+FL + +Y + L YPNL T + CIL LL + + +
Sbjct: 72 TLFQQLRFYLLNYLFLEDTSEYKSVLCSLDESVYPNLLPLTANICPCILKALLALVRQH 130
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 200 LEEYSETMESDILNWGNKEVEELLHXENISSCLIEICKT 316
+++YSE +D L+ + + +LH EN +S E+ T
Sbjct: 763 VKDYSEVSRADNLDASSDTIFSVLHAENEASITKEVHST 801
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -3
Query: 374 DAYGNLDQQTIAGTVRLYRAFYIFLLNNWKYSLYVIILPLLCYPNLE 234
DA G++ ++T +++ R + + ++ + + IL L C P+L+
Sbjct: 322 DASGHIAEETKDASIKAARGIFYSTVTSFIVAFSLAILYLFCCPDLD 368
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 326 LYRAFYIFLLNNWKYSLYVIILPLLCYP-NLEYRTPSF 216
L +++++NWK+ V LCY N + T F
Sbjct: 356 LLNTILVYMVSNWKHRFPVFFPIFLCYTLNASFSTIQF 393
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 392 VSIDRKDAYGNLDQQTIAGTVRLYRAFYIFLLNNWKYSLYVIIL 261
+S K + QQ + +L +F FL+NN+ +L++I L
Sbjct: 477 ISYVMKPEFFMKSQQNASDCKKLLSSFLYFLINNFNDNLHIIEL 520
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 162 IKILQNKETRRTLTLSNCHL 103
I +L+NKE L ++NCH+
Sbjct: 479 ITLLENKENGSRLIVANCHI 498
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 7.3
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = -3
Query: 281 SLYVIILPLLCYPNLEYRTPS 219
S +++P+LC+P+++ TP+
Sbjct: 474 SFVALMIPILCFPSVKNPTPA 494
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 196 YWWYKNPTHVLNKNTSK*RNQTNTNII*LSLTE 98
+WWY PT K S R TN +++ SL E
Sbjct: 252 HWWYNLPTEARLKGLSVGRT-TNYSVVKESLLE 283
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 194 IKLEEYSETMESDILNWGNKEVEELLHXENISS 292
IK E SET+E D NKE+ E + EN+ +
Sbjct: 1156 IKTEMKSETVEGD-----NKELRETMKGENVQT 1183
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +2
Query: 188 PPIKLEEYSETMESDILNWGNKEVEELLHXENISSCLIEICKTHD 322
PP + + +E + +LN + +++ L N+++C I +C + D
Sbjct: 1118 PPARFGDVTEVTK--VLNRESVKLDHYLTKTNLNTCYISMCLSCD 1160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,678
Number of Sequences: 5004
Number of extensions: 44715
Number of successful extensions: 108
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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