Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17k02
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583...    30   1.1  
03_04_0158 + 17822049-17822151,17822230-17822443,17822540-178227...    29   1.8  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    29   2.4  
08_01_0072 - 513561-513926,514055-514189,514274-514417,514505-51...    28   5.6  
11_06_0452 + 23774378-23775054,23775228-23775411,23775911-237759...    27   9.9  

>01_05_0772 +
           25056973-25057285,25057678-25058006,25058113-25058360,
           25058481-25059396
          Length = 601

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 531 CDKLVPRKLMLVAGFIRSSHRPSSIIAERLCRCSF--FTSKINLFLS 397
           C  +VPR   L+   ++     SS I +++C C +  FT  I L+L+
Sbjct: 86  CHDIVPRVAPLLQDIVKEYVNTSSYILQKVCACCYVQFTLFIELYLT 132


>03_04_0158 +
           17822049-17822151,17822230-17822443,17822540-17822700,
           17822811-17822956,17824048-17824110,17824199-17824291,
           17824313-17824396,17824736-17824897,17824998-17825104,
           17825715-17825812,17825940-17826208
          Length = 499

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 446 RSAMMELGLCDDLINPATNINFLGTNLSHLSYDLH 550
           RS ++E+G+ +D+ NP T  +F  T++S  +Y  H
Sbjct: 245 RSVLVEIGIAEDMHNPVTYGSF-ATSVSTFNYMCH 278


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 ENISSCLIEICKTHDIDGPCLLSFVDRDFHTHPFDQL 388
           EN SS +I   +  D+   C L+ +DR+F   P  ++
Sbjct: 300 ENGSSIIIVTTRISDVGRSCCLNGIDRNFEMEPLSEI 336


>08_01_0072 -
           513561-513926,514055-514189,514274-514417,514505-514744,
           516325-516636
          Length = 398

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -2

Query: 534 KCDKLVPRKLMLVAGFIRSSHRPSSIIAERLCRCSFFTSKINLFL 400
           +C K + + + L A  ++   RP  + +E L     F  +  L +
Sbjct: 203 QCPKKISKAIFLTATMVKDGQRPFDVFSEELASADVFLQESQLLI 247


>11_06_0452 +
           23774378-23775054,23775228-23775411,23775911-23775996,
           23776116-23777010
          Length = 613

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +2

Query: 182 FVPPIKLEEYSETMESDILNWGNKEVE-ELLHXENISSCLIEICKTHDIDGPCLLSFVD- 355
           F P I+      T E  +L++ + +++ EL+H    S+   EIC+ H  DG  +L  +  
Sbjct: 246 FDPVIQEHVRPITSEETLLHYLDPKIQNELIHLL-ASAIKSEICQLH--DGRAVLKVLKL 302

Query: 356 RDFHTHPFDQLKLGERK 406
            DF+   F++L   E K
Sbjct: 303 SDFNALTFERLYFSEAK 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,513
Number of Sequences: 37544
Number of extensions: 238787
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)