Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17k02
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         27   0.17 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    27   0.17 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    27   0.17 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.5  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   4.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 206 EYSETMESDILNWGNKEVEELLHXENISSCLIEICKTHDIDGPCLLSFVDRDF 364
           +Y     SDI  W +K    +L    + S L  I K     GP L  + D  F
Sbjct: 60  DYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDWSF 112


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 206 EYSETMESDILNWGNKEVEELLHXENISSCLIEICKTHDIDGPCLLSFVDRDF 364
           +Y     SDI  W +K    +L    + S L  I K     GP L  + D  F
Sbjct: 60  DYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDWSF 112


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 206 EYSETMESDILNWGNKEVEELLHXENISSCLIEICKTHDIDGPCLLSFVDRDF 364
           +Y     SDI  W +K    +L    + S L  I K     GP L  + D  F
Sbjct: 60  DYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDWSF 112


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 377 KDAYGNLDQ-QTIAGTVRLYRAFYIFLLNNWKYSLYVIILPLLCYPNL 237
           KD+Y      +TI   +   R  Y   +NN +Y+L   I+     PNL
Sbjct: 444 KDSYTVAGMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVIFSERPNL 491


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 245 GNKEVEELLHXENISSCLIEICKTHDIDGPCL 340
           G K V ELL  EN    L+  C T   + P L
Sbjct: 83  GIKAVMELLIDENSVKQLVSDCSTISEENPHL 114


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 132 VWFLYFEVFLFRT*VGFLY 188
           +WFL   +FLF   V F +
Sbjct: 296 IWFLGCTIFLFAAMVEFAF 314


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 212 SETMESDILNWGNKEVEELLHXEN 283
           S +  SD+L   NKE E+ ++ +N
Sbjct: 150 SNSSNSDVLFKQNKEEEQTINRKN 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,917
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)