Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17j23
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.84 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 160 RTCHHR*VRAHFRRTCHCQR 219
           R  HH    AH RRT H  R
Sbjct: 149 RCLHHDIENAHIRRTLHMNR 168


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 207 AGPTEMGSNSSMMA-GPTAIGTKSSMMGAGPATP 109
           AG T+  + +++   G T     +S  G GPATP
Sbjct: 208 AGSTDASTPATVTTTGATTTLPAASATGTGPATP 241



 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 293 DNPPLAPVADST 328
           D PPL+P +DS+
Sbjct: 439 DQPPLSPQSDSS 450


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
           +G++ +LV      GD  +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
           +G++ +LV      GD  +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
           +G++ +LV      GD  +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
           +G++ +LV      GD  +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
           +G++ +LV      GD  +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
           +G++ +LV      GD  +F+ NG
Sbjct: 135 DGNQVDLVLSSETGGDLSDFITNG 158


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
           +G++ +LV      GD  +F+ NG
Sbjct: 203 DGNQVDLVLSSETGGDLSDFITNG 226


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 277 NGDRYELVDDGRPNGDRFEFVDNG 206
           +G++ +LV      GD  +F+ NG
Sbjct: 203 DGNQVDLVLSSETGGDLSDFITNG 226


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 180 SSMMAGPTAIGTKSSMM 130
           +S +AG  AIGT + MM
Sbjct: 275 NSTLAGGVAIGTAAGMM 291



 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 294 STIAGPTEIGTNSSTMAGP 238
           ST+AG   IGT +  M  P
Sbjct: 276 STLAGGVAIGTAAGMMCQP 294


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 151 YRCRTCHHR*VRAHFRRT 204
           + C  CH R  R H  +T
Sbjct: 10  FECPECHKRFTRDHHLKT 27


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 125 APIIDDFVPIAVGPAIIDEFEPISV 199
           A I+  F+ +   PA+ D  +PI +
Sbjct: 496 ASIVGTFIILCEAPALRDNTKPIDM 520


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 144 KSSMMGAGPATPGLTRP 94
           K S  G  PA+PG  +P
Sbjct: 103 KMSTRGKRPASPGYVQP 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,720
Number of Sequences: 438
Number of extensions: 2527
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)