Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17j21
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.0  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   7.0  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   7.0  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   7.0  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   7.0  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   7.0  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   7.0  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   7.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 3   FASPSHPQHHSYRSRWDAGQ*EVTNTST 86
           F+S       ++R RW++ Q EVT T T
Sbjct: 77  FSSIRRLNSEAHRIRWESVQKEVTVTGT 104


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVNRLH*SNNQGE 165
           N R P+    + +  Y+RT ++    L   N QG+
Sbjct: 120 NSRYPLRPPQEVISHYRRTRRDRYTNLGLVNEQGQ 154


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 24  NEKEKLLEERTSRKRYSRSREREQN 48


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 246 NEKEKLLEERTSRKRYSRSREREQN 270


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 246 NEKEKLLEERTSRKRYSRSREREQN 270


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 257 NEKEKLLEERTSRKRYSRSREREQN 281


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 61  NERSPILQQSDSVKLYKRTYKNDVN 135
           NE+  +L++  S K Y R+ + + N
Sbjct: 257 NEKEKLLEERTSRKRYSRSREREQN 281


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 67  RSPILQQSDSVKL 105
           R+P+LQ+ DSV L
Sbjct: 508 RNPLLQEHDSVML 520


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 372 SRLTCGTKYGGPPISTS 322
           +R  CG   G PP++ S
Sbjct: 628 TRTVCGVAAGDPPLTIS 644


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 405 CSSSLARSYILSRLTCG 355
           C+SS+A S ++S   CG
Sbjct: 158 CTSSIASSGVVSAGECG 174


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 428 LAGAGAGPWPYLGVNCEGY 484
           L G G   WP   V CE Y
Sbjct: 277 LYGHGVCKWPGCEVICEDY 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,626
Number of Sequences: 438
Number of extensions: 3367
Number of successful extensions: 25
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)