Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17j09
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    33   0.041
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    29   0.67 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    29   0.67 
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    28   1.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   2.0  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   4.7  
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.3  

>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 32.7 bits (71), Expect = 0.041
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 545 VYAFPN---WVMWYIRFYYALYVSTSTSHC 465
           +YA+P+   W++W IR  Y +YV+ S  +C
Sbjct: 124 IYAYPDTGEWMVWVIRILYYIYVAVSFIYC 153


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 393 DCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPV 530
           D  L E       H V ++A E++T  +  G + CI  SNV  D V
Sbjct: 226 DGYLEEAYKLCKAHNVLFIADEVQTGVARTGKMLCIEHSNVKPDVV 271


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
 Frame = +3

Query: 168 GVDLKRKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSINNGGDGF 347
           G D +   QL V   S+ S+  +     L P   + +D  DL    F +A S+       
Sbjct: 161 GKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDL----FRQAGSVIRADIQM 216

Query: 348 ECQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMAS--TRGDIQCIVKSNVPH 521
             Q G     G ++       M +   +H  +++   +E          I+ +V    PH
Sbjct: 217 N-QEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPH 275

Query: 522 DPVRECVYLG 551
            P  +C+Y+G
Sbjct: 276 GPCSDCIYVG 285


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 542 YAFP---NWVMWYIRFYYALYVSTSTSHCFHFTGQVFH 438
           YAFP    W++W IR  Y ++V+ +          +FH
Sbjct: 121 YAFPYTGEWMVWLIRILYWIFVAVACIFVISLFYSLFH 158


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 527 WVMWYIRFYYALYVSTSTSHCFHFT 453
           W   + RFYY  YV  +T H F  T
Sbjct: 459 WSKRFSRFYYGHYVFVNTCHNFFLT 483


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 165 YRKRPKSRKYLQKTSYFLNVTTFVIR---SKFN 76
           +RK+  S + + +  YFLN++TF I    SK+N
Sbjct: 90  FRKKNPSFEKVSELLYFLNISTFPIELVISKYN 122


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 365 RSMLTFESVPTIVYTRCLPKRYELQVDI 282
           +++ T + +PT  Y  C+P +Y +Q DI
Sbjct: 55  KTITTTKGLPTNAYYNCVPSKY-IQSDI 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,500
Number of Sequences: 5004
Number of extensions: 58848
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)