Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17i16
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.50 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   1.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   6.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   6.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   6.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
 Frame = +2

Query: 299 DQEYEITKSLVKDFIS----------EGSTGQKLQSLLENRAEHHSNW 412
           ++E E+ K+L+K  +S          EGS G  L++LL+   E  + W
Sbjct: 705 EEEKEVEKALLKPLLSLEDLVRFSTLEGSGGDSLRTLLQRGQETGAEW 752


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 182 SNYVSAKYSTNVQNLPRLPVP 244
           +NY S K   N+ N+ ++PVP
Sbjct: 316 NNYNSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 182 SNYVSAKYSTNVQNLPRLPVP 244
           +NY S K   N+ N+ ++PVP
Sbjct: 327 NNYNSKKLYYNIINIEQIPVP 347


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +2

Query: 2  AVLSSLCRLIVVGRDENKRKSIK 70
          A+LSS+  L+++GR  + ++S++
Sbjct: 14 AILSSIVLLLLLGRTVDAQRSLE 36


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 260 LNKYLKTVRPHL 295
           LN  L TVRPHL
Sbjct: 248 LNDILLTVRPHL 259


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 260 LNKYLKTVRPHL 295
           LN  L TVRPHL
Sbjct: 248 LNDILLTVRPHL 259


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 368 LQSLLENRAEHHSNWLEQWWLNTAYLE 448
           + SLL N   +++N+ +  + N  Y+E
Sbjct: 304 ISSLLNNTIHNNNNYKKLQYYNINYIE 330


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 368 LQSLLENRAEHHSNWLEQWWLNTAYLE 448
           + SLL N   +++N+ +  + N  Y+E
Sbjct: 315 ISSLLNNTIHNNNNYKKLQYYNINYIE 341


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 368 LQSLLENRAEHHSNWLEQWWLNTAYLE 448
           + SLL N   +++N+ +  + N  Y+E
Sbjct: 315 ISSLLNNTIHNNNNYKKLQYYNINYIE 341


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 368 LQSLLENRAEHHSNWLEQWWLNTAYLE 448
           + SLL N   +++N+ +  + N  Y+E
Sbjct: 304 ISSLLNNTIHNNNNYKKLQYYNINYIE 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,157
Number of Sequences: 438
Number of extensions: 2500
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)