Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17i08
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.14 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.31 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 2   VIVTCQICTSVLLLLIHTVGKVI 70
           V++T  ICTS ++   HTVG +I
Sbjct: 138 VVITAAICTSGIVGRTHTVGYII 160


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 273 DKRLQEEL-NMLVDKLLGNEVDLYFPALQMLSNLIRT 380
           D RL+  + N+    + G+ VD+YF     LSN+ RT
Sbjct: 676 DARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRT 712


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 214 IDFNFYRKNSQDHHLEPLRAQLFP 143
           +D +   KNSQD+++  L  Q  P
Sbjct: 513 LDLSAKPKNSQDNNISLLEQQKIP 536



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 432  HYPALKQVYEKITDEKT 482
            HYP L  +Y   TD+K+
Sbjct: 1469 HYPDLHNLYAVPTDKKS 1485


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 444 LKQVYEKITDEKTKKF 491
           LK +YE  ++E+ KKF
Sbjct: 37  LKSMYEANSEEQMKKF 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,211
Number of Sequences: 438
Number of extensions: 2022
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)