Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17h24
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 171 SKNFSSGFYLLCKCTQNN 118
           S+++SS    LCKC   N
Sbjct: 660 SESYSSNNKTLCKCDAQN 677


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 228 CPRGNRIATVVSAGHNTSSSKN 163
           C R +  +T+ +   NT++S N
Sbjct: 219 CQRNSNNSTITAGNANTNASNN 240


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 249 WNVDHRWRLICSYEETRSI 305
           W  +HRWR I +    R++
Sbjct: 378 WICEHRWRQIYNMVRFRNL 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,583
Number of Sequences: 438
Number of extensions: 2302
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)