Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17h23
         (216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   0.95 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   0.95 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   2.9  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    20   3.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    20   3.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   3.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   5.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    19   6.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   6.7  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    19   6.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   8.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              19   8.8  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   8.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   8.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 0.95
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  TCLIIGXVNFIHFVFLLFINRLLSAVR 8
           TC+ I          +LF +RLLS++R
Sbjct: 222 TCIFIWAYVIPLIFIILFYSRLLSSIR 248


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 0.95
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  TCLIIGXVNFIHFVFLLFINRLLSAVR 8
           TC+ I          +LF +RLLS++R
Sbjct: 222 TCIFIWAYVIPLIFIILFYSRLLSSIR 248


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 33  INNKKTKCIKFTXPIIRQVD 92
           INN+  +C++F   +I   D
Sbjct: 806 INNQGLECLRFLNEVISDFD 825


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 12   TADNNLLINN 41
            TAD +LLINN
Sbjct: 1426 TADEDLLINN 1435


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 107 YSNIGVYLSNNRXGKFYTFCF 45
           Y NI   L+N+R    Y  CF
Sbjct: 29  YVNIDEILANDRLRNQYYDCF 49


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 107 YSNIGVYLSNNRXGKFYTFCF 45
           Y NI   L+N+R    Y  CF
Sbjct: 29  YVNIDEILANDRLRNQYYDCF 49


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 128 YVQCLSAYSNIGVYLSNNRXGKFYT 54
           Y  C   YS+I   ++  R   FYT
Sbjct: 229 YPCCTEPYSDITFNITMRRKTLFYT 253


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 104 SNIGVYLSNNRXGKFYT 54
           SN+ +YL  +   K+YT
Sbjct: 112 SNLQLYLGGDLDWKYYT 128


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 102 TVSGETLDIDYTLNTFR 152
           T   + +DID  LNT R
Sbjct: 25  TTKYDNVDIDVVLNTER 41


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 128 YVQCLSAYSNIGVYLSNNRXGKF 60
           Y+     +SNI  YL+    G+F
Sbjct: 70  YLDARLKFSNIAPYLNQIYGGQF 92


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 102 TVSGETLDIDYTLNTFR 152
           T   + +DID  LNT R
Sbjct: 25  TTKYDNVDIDVVLNTER 41


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/25 (24%), Positives = 12/25 (48%)
 Frame = +3

Query: 51  KCIKFTXPIIRQVDXNITVSGETLD 125
           KC+        +   ++T+ GET +
Sbjct: 170 KCVSDNGESYAKFTISVTIDGETFE 194


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -2

Query: 179 DQISFATACPKCIKCIIYVQCL 114
           D  S   +  KC K  ++++C+
Sbjct: 111 DSCSNVDSSDKCEKSFMFMKCM 132


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 67 VNFIHFVFLLFI 32
          + FIH +FL+ I
Sbjct: 7  IMFIHSIFLILI 18


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
          protein precursor protein.
          Length = 145

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 67 VNFIHFVFLLFI 32
          + FIH +FL+ I
Sbjct: 7  IMFIHSIFLILI 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,147
Number of Sequences: 438
Number of extensions: 641
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)