Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17h22
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 28 0.64
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 28 0.84
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 27 1.5
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 27 1.9
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 2.6
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 2.6
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 2.6
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 3.4
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 4.5
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 4.5
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 25 4.5
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 25 4.5
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 25 4.5
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 25 4.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 5.9
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 7.8
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 7.8
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 0.64
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 233 TDNDGQVSKEEWISLWE---KFSSSPSDWQNLY 322
T+ DG EE+ ++ KF++ P+ WQN Y
Sbjct: 240 TEEDGDEKDEEYSDIFSIKGKFNTRPNAWQNAY 272
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 27.9 bits (59), Expect = 0.84
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 94 AAIGVEESGENVQQLLLSKI*HHFADLSRL 5
+A+G+EE + L K HHFADL +
Sbjct: 85 SAVGIEEKSFKDEHLAQKKGLHHFADLKEI 114
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 221 SSADTDNDGQVSKEEWISLWEKFS-SSPS 304
SS DTD+DGQ+ EE K S SSPS
Sbjct: 245 SSEDTDSDGQMEDEEKSDSVHKSSFSSPS 273
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 240 TTAKSPKKSGFPSGRSFPAAPVTGRI 317
T AK+P K+ P+G+ P++P T +
Sbjct: 278 TFAKNPTKNSKPAGQVIPSSPFTSTL 303
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 60 TFSPLSSTPMAAEPLIKRTLNLPLKGYPNREAGVL 164
TF+ SS P + P +R +++ ++ PN + G++
Sbjct: 876 TFTVESSQPFSLSPGERREIHIKIRAKPNSQEGLI 910
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 159 LQPLDLDILSMASSKSFLSMVPLPLVSKKAVKTC 58
L LDL I S+ + SF +P P ++++ C
Sbjct: 201 LPQLDLSISSLYTLPSFFPQLPTPSFHRRSINLC 234
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 2.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 236 DNDGQVSKEEWISLWEKFSSSPSDWQN 316
DND Q + W S+ F+ P ++ N
Sbjct: 253 DNDSQTRRSSWSSIASAFNDFPEEFPN 279
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 294 AAPVTGRIYTASLYFNLRMLVMTGPSTAREFSSVYAS 404
A +TG++ S+ T PS++REFS +Y S
Sbjct: 135 AIDITGKVVCFSVNTGEVRTSFTVPSSSREFSGLYLS 171
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 327 LQYKFCQSLGLLENFSQREIHSSLETWPSLSVSALLNPSQTFKSV 193
L ++FC SLGLL + Q +++ PS+ + L +P F +
Sbjct: 257 LYHEFCYSLGLLLSVDQLKLY----LLPSIEKALLRSPEIIFSGI 297
>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 73
Score = 25.4 bits (53), Expect = 4.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 315 FCQSLGLLENFSQREIHSS--LETWPSLSVSALLNPSQTF 202
+C S+ LE S R SS L SLS+ NPSQTF
Sbjct: 26 YCVSIYRLEECSGRFKPSSYSLHLLKSLSIIICENPSQTF 65
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 4.5
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = -1
Query: 253 DLAVVIGVSAAQPIPDLQKRVLNFFVLSISSTPASRFGYPFNGKFKVLFINGSAAIGV 80
D V IG+ A +P P + NF+ + S R PF GK F IGV
Sbjct: 179 DTLVSIGL-ATKPYPPFRLPGWNFWSTAYVSDGTRRSNSPFTGKPYSSFYQQGDVIGV 235
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 230 DTDNDGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSID 373
D +N Q KEEW + + + +PS + + + QL+D S +I+
Sbjct: 137 DFNNKDQFWKEEWSTEQYEIAENPSGYASA-LHTLTQLDDGSETNAIN 183
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 236 DNDGQVS---KEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEG 382
D +G++S KEE ISL E+ + + ++ + E N S+++EG
Sbjct: 457 DMEGRISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEG 508
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 4.5
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1
Query: 190 LNFFVLSISSTPASRFGYPFNGKFKVLFINGSAAIGVEESGENVQQLLLS 41
LN + +IS AS+ YP K LFI GS V S V +LL+
Sbjct: 36 LNVKLENISVVDASK--YPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLA 83
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 26 MVSDFRKKKLLHVFTAFFDTNGSGTIDKKDFE 121
+VS F+++KLL+ +A N G+ + DF+
Sbjct: 75 LVSSFKERKLLNTNSANLRLNSIGSYEMIDFK 106
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 181 FVLSISSTPASRFGYPFNG 125
F LS+SS P+S+FG P G
Sbjct: 82 FRLSLSSPPSSKFGGPSFG 100
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 128 IERISKSRGWSAGDAQYKE-VQDTLLKVWDGLSS 226
++ I+K+RG SAGD+ + V + LL DG++S
Sbjct: 599 LDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNS 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,456
Number of Sequences: 5004
Number of extensions: 47536
Number of successful extensions: 175
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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