Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17h22
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   0.74 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   6.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 433 DAASALSRPKDA*TEENSLAVDGPVITSILKLKYKLAV*ILPVTGAAGKLLPEG 272
           D  S ++RP D       L+    ++  +L   Y +   ++PV G  G+ +PEG
Sbjct: 144 DRYSTIARPLDG-----KLSRGQVILFIVLIWTYTIPWALMPVMGVWGRFVPEG 192


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 23  KMVSDFRKKKLLHVFTAFFDTNGSGTIDKKDFELAIE 133
           K++S  + ++ L +FT  F    SGT++  +    I+
Sbjct: 363 KIISSKKDRQELWIFTISFQKYMSGTLNSNETNFRIQ 399


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 218 LSSADTDNDGQVSKEEWISLWEKFSS 295
           +S  DTD DG+++  E+   + K  S
Sbjct: 280 ISYDDTDGDGKLNVNEFYMAFSKLYS 305



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +2

Query: 71  AFFDTNGSGTIDKKDFELAIERI 139
           ++ DT+G G ++  +F +A  ++
Sbjct: 281 SYDDTDGDGKLNVNEFYMAFSKL 303


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 142 GYPFNGKFKVLFINGSAAIGVEESGEN 62
           GY   G F  + I   A I ++E+G N
Sbjct: 72  GYDDGGNFNEVVIREIAEIFLDENGVN 98


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3

Query: 383 FPRCRWTR 360
           FP C+W+R
Sbjct: 152 FPECKWSR 159


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 171 ASPALQPLDLDILSMASSKSFLSMV 97
           A+PA QPLDL      S  + +S++
Sbjct: 506 ATPADQPLDLSAKPKNSQDNNISLL 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,184
Number of Sequences: 438
Number of extensions: 3148
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)