Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17h11
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.37 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.37 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.1  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.1  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 218 YFNATYVDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKE 391
           YF+ TY+ +  +   H+K  ++E   +  TL+  +  +   L  +   TL Q +   E
Sbjct: 39  YFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDE 96


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 218 YFNATYVDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKE 391
           YF+ TY+ +  +   H+K  ++E   +  TL+  +  +   L  +   TL Q +   E
Sbjct: 39  YFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDE 96


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -2

Query: 292 IKFADTAFVVVTGNEIMVDVGGVEVWYFKLEHRYLVLRGD 173
           +KF+   F+V+   + M+D+G +      ++H  +V  G+
Sbjct: 343 VKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGE 382


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 138 PRSRNVSRAEGRSPRST 188
           PR+R V R++GR    T
Sbjct: 1   PRTRRVKRSDGRGNGGT 17


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 117 NASPTTW 137
           NASPTTW
Sbjct: 514 NASPTTW 520


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 200  TPVSRTARGSALCPGYISRSRPGGR 126
            TPV R A+ S+    Y   S  GGR
Sbjct: 1339 TPVPRLAQDSSEDESYRGPSASGGR 1363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,624
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)