Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17h03
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...   181   8e-47
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   4.5  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.9  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    25   7.9  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   7.9  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   7.9  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    25   7.9  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score =  181 bits (440), Expect = 8e-47
 Identities = 86/169 (50%), Positives = 118/169 (69%)
 Frame = +3

Query: 66  MKGCIFNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPS 245
           M    FN ++GY+E L RG++  +L+Q  Y NL QCE+LED +L L  TDYG FLAN+ S
Sbjct: 1   MDALSFNTNSGYIEALVRGYESALLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQ-S 59

Query: 246 PLSVSTIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPIS 425
            L+ S I  K  EKL+ EF  +R  + E LS F+D+ITY+YMIDNI+LL+TGT++ +   
Sbjct: 60  KLTSSIISAKATEKLLDEFDLIRRQADETLSKFMDYITYAYMIDNIMLLLTGTVNGQDTH 119

Query: 426 ELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQD 572
           +L+ +CHPLG FE + A+ VA    ELY+ VL++TPLAP+F DC+S  D
Sbjct: 120 DLLERCHPLGWFETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADD 168


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 216 YGTFLANEPSPLSVSTIDDKLREKLVIE 299
           Y T++AN+    S +T+D  LR  L ++
Sbjct: 374 YSTWIANKHKTASSATVDSPLRRSLSVD 401


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 148 DCFRIPHLKPRHKPSKYPASILNM 77
           D F +PH  P++    YP ++L++
Sbjct: 593 DKFYVPHSPPKYTMETYPNNVLSL 616


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 389 VDYWYIAPETYLGVNSKVPSI 451
           V  WY APE  LG +   P+I
Sbjct: 180 VTIWYRAPELLLGAHDYTPAI 200


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 342 FLDFITYSYMIDNIILLITGTLH 410
           FLDF+T    I N+++L+T   H
Sbjct: 140 FLDFLTLRPYISNLLVLLTKHYH 162


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 192 LDLQVSHTAPSSSSQIVSEY 133
           +DL++S+T P S ++I+  Y
Sbjct: 727 IDLEISNTGPMSGAEIIQVY 746


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 156 LNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVSTIDDKLREKLVIEFQHLRNHSVEPL 335
           LN V   ++   K+H  G++YG++L N    L+      K    L+I    +     +P 
Sbjct: 198 LNYVMSNSVST-KIHFVGSEYGSYLLNSYLDLNWKKFSGKAGAILLIMNMSINEELHDP- 255

Query: 336 STFLDFITY 362
               D+++Y
Sbjct: 256 ----DYVSY 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,564
Number of Sequences: 5004
Number of extensions: 52182
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)