Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17h01
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    42   8e-05
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    32   0.088
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   0.11 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   1.9  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    26   5.8  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   7.6  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   7.6  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
 Frame = +1

Query: 187 LQYRWTGLFLLITALGALTLFLYGFFPLKYHSGKFAHMSDLPNFIDGVSIDGQQVYNSGE 366
           +++ + G+F L    G++ LFL GFFP K  S   A MS+   F     ID         
Sbjct: 1   MRFAFFGIFWL-QIFGSI-LFLLGFFPHKNDSTGKA-MSN--QFSPPAVID--------- 46

Query: 367 NSVILMVIDGLRYDFVTEEY--MAYTGQLLKNKSACI-YVTVAEPPTVTMPRIKS 522
             V+ +++D LR DFV  +   M +T  LL N +  I +   A  PTVTMPR+K+
Sbjct: 47  -QVVFVMVDALRADFVFSKSHNMPFTQSLLYNSTHGIGFSAFARSPTVTMPRLKA 100


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 508 PRIKSPERKKEKAQWRRTINFWRDIFAMMTGSVSTFADVA 627
           PR   P   + +   RRT+ FWR+ F++  G + T+ D A
Sbjct: 198 PRENPPTESQPEKPLRRTLYFWRNGFSVDDGPIYTYDDPA 237


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect(2) = 0.11
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
 Frame = +1

Query: 376 ILMVIDGLRYDFV----TEEY------MAYTGQLLKNKSACIYVTVAEPPTVTMPRIK 519
           ++++ID LRYDF+       Y        Y   +L  +++ +   +A+ PT T  R+K
Sbjct: 85  VIVIIDALRYDFLIPYNDSNYYHNAFTTPYETSVLHPENSYLTQFIADAPTTTSQRLK 142



 Score = 25.0 bits (52), Expect(2) = 0.11
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 589 MMTGSVSTFADVALNFGAPAVXGDSVL 669
           + TGS+ TF D+  NF    +  D++L
Sbjct: 144 LTTGSLPTFIDLGSNFAGTNIDEDNLL 170


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 451 KNKSACIYVTVAEPPTVTMPRIKSPERKKEKAQWRRTINFWRDIF 585
           K  +  I   + + P+VT+P +    +KK++ +WR   N W +++
Sbjct: 718 KEHAQQIIENLQKNPSVTIPIVLERLKKKDR-EWRSLQNHWNELW 761


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = -2

Query: 467 QADLFFKSWPVYA 429
           QA+LFF+SWP+++
Sbjct: 125 QAELFFQSWPLHS 137


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 145 LKPAFKQCNFLYCNFAHH-ACFLVRLFTLCNI 53
           ++P + Q  FL  + + + ACF + +F LCN+
Sbjct: 215 IRPEYLQRFFLIKSISTYIACFAMLIFLLCNV 246


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 466 CIYVTVAEPPTVTMPRIKSPERKKEKAQWRRTINFWRDIFAMM 594
           CIY+ +A P    +  +  PE K      R T N+ R +F M+
Sbjct: 21  CIYICIAVPIRSDLSTVFEPEAKGS----RITSNYRRSLFNML 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,198
Number of Sequences: 5004
Number of extensions: 56501
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)