Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17g16
(419 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008308-1|AAH08308.2| 759|Homo sapiens cullin 4A protein. 30 2.7
AY365124-1|AAR13072.1| 759|Homo sapiens cullin 4A protein. 30 2.7
AL136221-5|CAI13795.1| 659|Homo sapiens cullin 4A protein. 30 2.7
AL136221-4|CAM18410.1| 759|Homo sapiens cullin 4A protein. 30 2.7
AF077188-1|AAD45191.1| 659|Homo sapiens cullin 4A protein. 30 2.7
AB178950-1|BAD93235.1| 759|Homo sapiens cullin-4A protein. 30 2.7
BC005136-1|AAH05136.1| 220|Homo sapiens SLC35A3 protein protein. 29 6.3
AB021981-1|BAA77841.1| 325|Homo sapiens UDP-N-acetylglucosamine... 29 6.3
>BC008308-1|AAH08308.2| 759|Homo sapiens cullin 4A protein.
Length = 759
Score = 30.3 bits (65), Expect = 2.7
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 35 RITIFILSL-LFYDYEINCNNSTA*TVKDNNRKNMALSFFRTHIISRHARKQFYQNKRNS 211
R I I S+ LF D NST ++ D M L FRTHIIS + Q+K
Sbjct: 144 RQMIMIRSIFLFLDRTYVLQNSTLPSIWD-----MGLELFRTHIIS----DKMVQSKTID 194
Query: 212 GYVVLI--PEIGEDADKNTLLSENGL 283
G ++LI GE D++ L S G+
Sbjct: 195 GILLLIERERSGEAVDRSLLRSLLGM 220
>AY365124-1|AAR13072.1| 759|Homo sapiens cullin 4A protein.
Length = 759
Score = 30.3 bits (65), Expect = 2.7
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 35 RITIFILSL-LFYDYEINCNNSTA*TVKDNNRKNMALSFFRTHIISRHARKQFYQNKRNS 211
R I I S+ LF D NST ++ D M L FRTHIIS + Q+K
Sbjct: 144 RQMIMIRSIFLFLDRTYVLQNSTLPSIWD-----MGLELFRTHIIS----DKMVQSKTID 194
Query: 212 GYVVLI--PEIGEDADKNTLLSENGL 283
G ++LI GE D++ L S G+
Sbjct: 195 GILLLIERERSGEAVDRSLLRSLLGM 220
>AL136221-5|CAI13795.1| 659|Homo sapiens cullin 4A protein.
Length = 659
Score = 30.3 bits (65), Expect = 2.7
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 35 RITIFILSL-LFYDYEINCNNSTA*TVKDNNRKNMALSFFRTHIISRHARKQFYQNKRNS 211
R I I S+ LF D NST ++ D M L FRTHIIS + Q+K
Sbjct: 44 RQMIMIRSIFLFLDRTYVLQNSTLPSIWD-----MGLELFRTHIIS----DKMVQSKTID 94
Query: 212 GYVVLI--PEIGEDADKNTLLSENGL 283
G ++LI GE D++ L S G+
Sbjct: 95 GILLLIERERSGEAVDRSLLRSLLGM 120
>AL136221-4|CAM18410.1| 759|Homo sapiens cullin 4A protein.
Length = 759
Score = 30.3 bits (65), Expect = 2.7
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 35 RITIFILSL-LFYDYEINCNNSTA*TVKDNNRKNMALSFFRTHIISRHARKQFYQNKRNS 211
R I I S+ LF D NST ++ D M L FRTHIIS + Q+K
Sbjct: 144 RQMIMIRSIFLFLDRTYVLQNSTLPSIWD-----MGLELFRTHIIS----DKMVQSKTID 194
Query: 212 GYVVLI--PEIGEDADKNTLLSENGL 283
G ++LI GE D++ L S G+
Sbjct: 195 GILLLIERERSGEAVDRSLLRSLLGM 220
>AF077188-1|AAD45191.1| 659|Homo sapiens cullin 4A protein.
Length = 659
Score = 30.3 bits (65), Expect = 2.7
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 35 RITIFILSL-LFYDYEINCNNSTA*TVKDNNRKNMALSFFRTHIISRHARKQFYQNKRNS 211
R I I S+ LF D NST ++ D M L FRTHIIS + Q+K
Sbjct: 44 RQMIMIRSIFLFLDRTYVLQNSTLPSIWD-----MGLELFRTHIIS----DKMVQSKTID 94
Query: 212 GYVVLI--PEIGEDADKNTLLSENGL 283
G ++LI GE D++ L S G+
Sbjct: 95 GILLLIERERSGEAVDRSLLRSLLGM 120
>AB178950-1|BAD93235.1| 759|Homo sapiens cullin-4A protein.
Length = 759
Score = 30.3 bits (65), Expect = 2.7
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +2
Query: 35 RITIFILSL-LFYDYEINCNNSTA*TVKDNNRKNMALSFFRTHIISRHARKQFYQNKRNS 211
R I I S+ LF D NST ++ D M L FRTHIIS + Q+K
Sbjct: 144 RQMIMIRSIFLFLDRTYVLQNSTLPSIWD-----MGLELFRTHIIS----DKMVQSKTID 194
Query: 212 GYVVLI--PEIGEDADKNTLLSENGL 283
G ++LI GE D++ L S G+
Sbjct: 195 GILLLIERERSGEAVDRSLLRSLLGM 220
>BC005136-1|AAH05136.1| 220|Homo sapiens SLC35A3 protein protein.
Length = 220
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +3
Query: 252 IKILSCLRMVYQSSMKCQ*KNVLQQLANKV*NMKMESDKLNI 377
+KI++C+ +VY+ S KC + + + L +++ N ME+ KL I
Sbjct: 49 LKIMACILLVYKDS-KCSLRALNRVLHDEILNKPMETLKLAI 89
>AB021981-1|BAA77841.1| 325|Homo sapiens UDP-N-acetylglucosamine
transporter protein.
Length = 325
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +3
Query: 252 IKILSCLRMVYQSSMKCQ*KNVLQQLANKV*NMKMESDKLNI 377
+KI++C+ +VY+ S KC + + + L +++ N ME+ KL I
Sbjct: 49 LKIMACILLVYKDS-KCSLRALNRVLHDEILNKPMETLKLAI 89
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,257,880
Number of Sequences: 237096
Number of extensions: 889245
Number of successful extensions: 1582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1582
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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