Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f24
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.52 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 420 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLS 313
           TN+   +++   S ++      P   LPA STS+ S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINS 868


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 417 WFWLATWSQLPL 452
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 417 WFWLATWSQLPL 452
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 311 VDNIDVDSAGKKGVGVINAPGANA 382
           +DN+   ++G +GV +++A  A +
Sbjct: 709 LDNVMCRTSGPRGVAIVSASTARS 732


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,041
Number of Sequences: 438
Number of extensions: 2298
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)