Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17f22
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 188 3e-49
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 188 3e-49
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 0.91
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 0.91
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 3.7
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 6.4
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 24 8.5
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 24 8.5
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 8.5
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 188 bits (458), Expect = 3e-49
Identities = 90/113 (79%), Positives = 100/113 (88%)
Frame = +2
Query: 83 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 262
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62
Query: 263 EKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 421
EKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIK
Sbjct: 63 EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIK 115
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 188 bits (458), Expect = 3e-49
Identities = 90/113 (79%), Positives = 100/113 (88%)
Frame = +2
Query: 83 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 262
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62
Query: 263 EKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 421
EKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIK
Sbjct: 63 EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIK 115
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 0.91
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 116 YEDSALHF*NYPSEPSSPFYLSST 45
YE+ + + +Y S+PSSP Y+SS+
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 27.5 bits (58), Expect = 0.91
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 254 GYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQHI 138
G +Y W I A +L V P PWR+ S+ + + I
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSSQRGLRKSI 159
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 113 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 256
H++ + N +G A K+ +QLTG+ R GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 6.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 284 TVRGAKAEEILERGLKVREYE 346
T+ G KA+ RGL++R YE
Sbjct: 432 TLEGHKAKSRSTRGLRIRSYE 452
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 24.2 bits (50), Expect = 8.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 288 SEELKQKKSLRGV*KSENMNCGVTTSPPRVIL 383
S++L + SLR V + + + GV PPR ++
Sbjct: 76 SDQLDSRPSLRRVSSAPDSHKGVEAPPPRPLI 107
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.2 bits (50), Expect = 8.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 358 VTPQFIFSDFQTPLKDFFCFSSSDCTMDS 272
+ PQ IF D+ K CFS MD+
Sbjct: 310 IFPQPIFQDYLQQYKRAVCFSKFGIVMDT 338
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 8.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 321 LSRISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGC 205
L+ S L PRT Q +I + + +A+ +TGC
Sbjct: 297 LNATSPLLDPRTTQIVSIVPIPAYESQQIYCVAITSTGC 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,309
Number of Sequences: 5004
Number of extensions: 31630
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -